miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 5' -60.2 NC_001806.1 + 1730 0.69 0.581319
Target:  5'- cGUCCAG-CGc---CGGCagCACGGCCCGg -3'
miRNA:   3'- -CAGGUCuGCuagaGCCG--GUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 2542 0.72 0.415251
Target:  5'- -aCCGcgcGGCGAUCgaGGCCAgGGCCCGc -3'
miRNA:   3'- caGGU---CUGCUAGagCCGGUgCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 2617 0.72 0.39859
Target:  5'- gGUCCG--UGAgCUCGGCCACGGCgCGc -3'
miRNA:   3'- -CAGGUcuGCUaGAGCCGGUGCCGgGC- -5'
5590 5' -60.2 NC_001806.1 + 2721 0.66 0.728345
Target:  5'- -cCCAGGgGGUCggGGCCcucgGCGGgCCGg -3'
miRNA:   3'- caGGUCUgCUAGagCCGG----UGCCgGGC- -5'
5590 5' -60.2 NC_001806.1 + 3087 0.67 0.699473
Target:  5'- gGUCCGcGGCGGcggCGGCCGCGgaGCUCGg -3'
miRNA:   3'- -CAGGU-CUGCUagaGCCGGUGC--CGGGC- -5'
5590 5' -60.2 NC_001806.1 + 5077 0.66 0.737825
Target:  5'- gGUCUGGGCucGGggUgGGCgGCGGCCCGu -3'
miRNA:   3'- -CAGGUCUG--CUagAgCCGgUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 5596 0.7 0.485912
Target:  5'- -gCCGGGgGcccgUGGCCGCGGCCCGu -3'
miRNA:   3'- caGGUCUgCuagaGCCGGUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 6088 0.66 0.755593
Target:  5'- -cCCGGGCGGcggggggcgggucUCUcCGGCgCACauaaaGGCCCGg -3'
miRNA:   3'- caGGUCUGCU-------------AGA-GCCG-GUG-----CCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 10090 0.67 0.669141
Target:  5'- -gCCAGGCGAgacguccacguacUCgCGGCgCACGGCgCGu -3'
miRNA:   3'- caGGUCUGCU-------------AGaGCCG-GUGCCGgGC- -5'
5590 5' -60.2 NC_001806.1 + 21394 0.72 0.423741
Target:  5'- cGUCCGGACGAUCcCGacgcccgaccCCGCGGCCUc -3'
miRNA:   3'- -CAGGUCUGCUAGaGCc---------GGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 24678 0.69 0.552092
Target:  5'- -gCgAGGCGGUgCgcgcCGGCC-CGGCCCGg -3'
miRNA:   3'- caGgUCUGCUA-Ga---GCCGGuGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 24834 0.67 0.679947
Target:  5'- -gCUGGGC---CUCGGCCACGGgCCGc -3'
miRNA:   3'- caGGUCUGcuaGAGCCGGUGCCgGGC- -5'
5590 5' -60.2 NC_001806.1 + 24905 0.66 0.747219
Target:  5'- ---gAGGCGggCUUGGCCAC-GCCCc -3'
miRNA:   3'- caggUCUGCuaGAGCCGGUGcCGGGc -5'
5590 5' -60.2 NC_001806.1 + 30386 0.66 0.747219
Target:  5'- -gCCGGGCGcgUgcgacggUGGCgCGCGGCUCGg -3'
miRNA:   3'- caGGUCUGCuaGa------GCCG-GUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 33115 0.67 0.709161
Target:  5'- gGUCCGGACGGggCcCGgaccGCCGCGGUCgGg -3'
miRNA:   3'- -CAGGUCUGCUa-GaGC----CGGUGCCGGgC- -5'
5590 5' -60.2 NC_001806.1 + 33743 0.66 0.718788
Target:  5'- -gCCGGcucuGCGGUgUCGGCgGCGGCUgCGg -3'
miRNA:   3'- caGGUC----UGCUAgAGCCGgUGCCGG-GC- -5'
5590 5' -60.2 NC_001806.1 + 38285 0.66 0.722619
Target:  5'- -gCCGGGCGAgcggcgucgaguaUCGGCUcCGGUCCGu -3'
miRNA:   3'- caGGUCUGCUag-----------AGCCGGuGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 46603 0.72 0.406867
Target:  5'- aUCCAGACGuggugcaggacGUCgacgCGGCCACGGCgacUCGa -3'
miRNA:   3'- cAGGUCUGC-----------UAGa---GCCGGUGCCG---GGC- -5'
5590 5' -60.2 NC_001806.1 + 52568 0.76 0.228642
Target:  5'- -cCCGGACGA-CaUGGCCAgCGGCCCGg -3'
miRNA:   3'- caGGUCUGCUaGaGCCGGU-GCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 52903 0.66 0.719747
Target:  5'- cGUCCGGcGCGcGUCucuggggagccucgaUCGGCCACGGguguggggacccgcCCCGg -3'
miRNA:   3'- -CAGGUC-UGC-UAG---------------AGCCGGUGCC--------------GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.