miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 5' -60.2 NC_001806.1 + 118670 1.08 0.001407
Target:  5'- gGUCCAGACGAUCUCGGCCACGGCCCGg -3'
miRNA:   3'- -CAGGUCUGCUAGAGCCGGUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 52568 0.76 0.228642
Target:  5'- -cCCGGACGA-CaUGGCCAgCGGCCCGg -3'
miRNA:   3'- caGGUCUGCUaGaGCCGGU-GCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 67777 0.75 0.275239
Target:  5'- cUCCGGugGGUUgugUUGGCCGacUGGCCCGg -3'
miRNA:   3'- cAGGUCugCUAG---AGCCGGU--GCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 100125 0.75 0.275239
Target:  5'- -gCCuGGCGGUCcgCGGCUAUGGCCCc -3'
miRNA:   3'- caGGuCUGCUAGa-GCCGGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 56638 0.74 0.329128
Target:  5'- -gCCGGuGCGAccUCaUCGGCCgGCGGCCCGu -3'
miRNA:   3'- caGGUC-UGCU--AG-AGCCGG-UGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 89517 0.73 0.348995
Target:  5'- aUCCGGGCGGcgagCUgcugcgcggcgcccCGGCCgGCGGCCCGg -3'
miRNA:   3'- cAGGUCUGCUa---GA--------------GCCGG-UGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 147083 0.73 0.366581
Target:  5'- uUCCGGGCacacuucCUCGGCCcccGCGGCCCa -3'
miRNA:   3'- cAGGUCUGcua----GAGCCGG---UGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 128561 0.72 0.382362
Target:  5'- cGUCCAGggcGCGGUCguagcgggaGGUCACGGCgCCGa -3'
miRNA:   3'- -CAGGUC---UGCUAGag-------CCGGUGCCG-GGC- -5'
5590 5' -60.2 NC_001806.1 + 151003 0.72 0.382362
Target:  5'- -gCCAGGCGGg--CGGCCGaGGCCCa -3'
miRNA:   3'- caGGUCUGCUagaGCCGGUgCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 87718 0.72 0.39859
Target:  5'- uGUCCuucaGGACGGcUUCGGCCACGGCg-- -3'
miRNA:   3'- -CAGG----UCUGCUaGAGCCGGUGCCGggc -5'
5590 5' -60.2 NC_001806.1 + 2617 0.72 0.39859
Target:  5'- gGUCCG--UGAgCUCGGCCACGGCgCGc -3'
miRNA:   3'- -CAGGUcuGCUaGAGCCGGUGCCGgGC- -5'
5590 5' -60.2 NC_001806.1 + 46603 0.72 0.406867
Target:  5'- aUCCAGACGuggugcaggacGUCgacgCGGCCACGGCgacUCGa -3'
miRNA:   3'- cAGGUCUGC-----------UAGa---GCCGGUGCCG---GGC- -5'
5590 5' -60.2 NC_001806.1 + 128040 0.72 0.415251
Target:  5'- -gCC-GACGAUgccCguggCGGCCACGGCCCc -3'
miRNA:   3'- caGGuCUGCUA---Ga---GCCGGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 2542 0.72 0.415251
Target:  5'- -aCCGcgcGGCGAUCgaGGCCAgGGCCCGc -3'
miRNA:   3'- caGGU---CUGCUAGagCCGGUgCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 21394 0.72 0.423741
Target:  5'- cGUCCGGACGAUCcCGacgcccgaccCCGCGGCCUc -3'
miRNA:   3'- -CAGGUCUGCUAGaGCc---------GGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 115322 0.71 0.441027
Target:  5'- -cCCGGGCcuUCgCGGCCACGGCCa- -3'
miRNA:   3'- caGGUCUGcuAGaGCCGGUGCCGGgc -5'
5590 5' -60.2 NC_001806.1 + 5596 0.7 0.485912
Target:  5'- -gCCGGGgGcccgUGGCCGCGGCCCGu -3'
miRNA:   3'- caGGUCUgCuagaGCCGGUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 70039 0.7 0.501665
Target:  5'- -cCCGGuCGAguucgcccugcgugUgUUGGCCugGGCCCGg -3'
miRNA:   3'- caGGUCuGCU--------------AgAGCCGGugCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 115887 0.7 0.513861
Target:  5'- cUCCgcGGACGGauucgcUCUCGGUgcguCugGGCCCGa -3'
miRNA:   3'- cAGG--UCUGCU------AGAGCCG----GugCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 119897 0.7 0.523324
Target:  5'- uGUCCucGGCGc---UGGCCACGGCCCu -3'
miRNA:   3'- -CAGGu-CUGCuagaGCCGGUGCCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.