Results 1 - 20 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 75240 | 0.66 | 0.765715 |
Target: 5'- cGUCCuGGuCGAcg-CGGUgACGGCCCu -3' miRNA: 3'- -CAGGuCU-GCUagaGCCGgUGCCGGGc -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 128040 | 0.72 | 0.415251 |
Target: 5'- -gCC-GACGAUgccCguggCGGCCACGGCCCc -3' miRNA: 3'- caGGuCUGCUA---Ga---GCCGGUGCCGGGc -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 2542 | 0.72 | 0.415251 |
Target: 5'- -aCCGcgcGGCGAUCgaGGCCAgGGCCCGc -3' miRNA: 3'- caGGU---CUGCUAGagCCGGUgCCGGGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 21394 | 0.72 | 0.423741 |
Target: 5'- cGUCCGGACGAUCcCGacgcccgaccCCGCGGCCUc -3' miRNA: 3'- -CAGGUCUGCUAGaGCc---------GGUGCCGGGc -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 115322 | 0.71 | 0.441027 |
Target: 5'- -cCCGGGCcuUCgCGGCCACGGCCa- -3' miRNA: 3'- caGGUCUGcuAGaGCCGGUGCCGGgc -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 5596 | 0.7 | 0.485912 |
Target: 5'- -gCCGGGgGcccgUGGCCGCGGCCCGu -3' miRNA: 3'- caGGUCUgCuagaGCCGGUGCCGGGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 70039 | 0.7 | 0.501665 |
Target: 5'- -cCCGGuCGAguucgcccugcgugUgUUGGCCugGGCCCGg -3' miRNA: 3'- caGGUCuGCU--------------AgAGCCGGugCCGGGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 115887 | 0.7 | 0.513861 |
Target: 5'- cUCCgcGGACGGauucgcUCUCGGUgcguCugGGCCCGa -3' miRNA: 3'- cAGG--UCUGCU------AGAGCCG----GugCCGGGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 91894 | 0.7 | 0.523324 |
Target: 5'- -aCCAGGCGGUCcccaCGGCCaugggGCGGCUgGa -3' miRNA: 3'- caGGUCUGCUAGa---GCCGG-----UGCCGGgC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 46603 | 0.72 | 0.406867 |
Target: 5'- aUCCAGACGuggugcaggacGUCgacgCGGCCACGGCgacUCGa -3' miRNA: 3'- cAGGUCUGC-----------UAGa---GCCGGUGCCG---GGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 87718 | 0.72 | 0.39859 |
Target: 5'- uGUCCuucaGGACGGcUUCGGCCACGGCg-- -3' miRNA: 3'- -CAGG----UCUGCUaGAGCCGGUGCCGggc -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 2617 | 0.72 | 0.39859 |
Target: 5'- gGUCCG--UGAgCUCGGCCACGGCgCGc -3' miRNA: 3'- -CAGGUcuGCUaGAGCCGGUGCCGgGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 52568 | 0.76 | 0.228642 |
Target: 5'- -cCCGGACGA-CaUGGCCAgCGGCCCGg -3' miRNA: 3'- caGGUCUGCUaGaGCCGGU-GCCGGGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 67777 | 0.75 | 0.275239 |
Target: 5'- cUCCGGugGGUUgugUUGGCCGacUGGCCCGg -3' miRNA: 3'- cAGGUCugCUAG---AGCCGGU--GCCGGGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 100125 | 0.75 | 0.275239 |
Target: 5'- -gCCuGGCGGUCcgCGGCUAUGGCCCc -3' miRNA: 3'- caGGuCUGCUAGa-GCCGGUGCCGGGc -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 56638 | 0.74 | 0.329128 |
Target: 5'- -gCCGGuGCGAccUCaUCGGCCgGCGGCCCGu -3' miRNA: 3'- caGGUC-UGCU--AG-AGCCGG-UGCCGGGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 89517 | 0.73 | 0.348995 |
Target: 5'- aUCCGGGCGGcgagCUgcugcgcggcgcccCGGCCgGCGGCCCGg -3' miRNA: 3'- cAGGUCUGCUa---GA--------------GCCGG-UGCCGGGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 147083 | 0.73 | 0.366581 |
Target: 5'- uUCCGGGCacacuucCUCGGCCcccGCGGCCCa -3' miRNA: 3'- cAGGUCUGcua----GAGCCGG---UGCCGGGc -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 128561 | 0.72 | 0.382362 |
Target: 5'- cGUCCAGggcGCGGUCguagcgggaGGUCACGGCgCCGa -3' miRNA: 3'- -CAGGUC---UGCUAGag-------CCGGUGCCG-GGC- -5' |
|||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 151003 | 0.72 | 0.382362 |
Target: 5'- -gCCAGGCGGg--CGGCCGaGGCCCa -3' miRNA: 3'- caGGUCUGCUagaGCCGGUgCCGGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home