miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 52720 0.75 0.339138
Target:  5'- gGCGCCGCGCGgacGGCGCGgGgccccCGCUUCc -3'
miRNA:   3'- -CGCGGCGCGUau-UCGUGCgU-----GCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 9826 0.66 0.84204
Target:  5'- cGCGCCGCGCugugggagGGGCuguuccaccaccGCGUuccgguacuGCGCCg- -3'
miRNA:   3'- -CGCGGCGCGua------UUCG------------UGCG---------UGCGGag -5'
5591 3' -57.8 NC_001806.1 + 21350 0.73 0.438598
Target:  5'- uCGCCGCGaCAgcuGGCucUGCugGCCUCc -3'
miRNA:   3'- cGCGGCGC-GUau-UCGu-GCGugCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 3716 0.73 0.420001
Target:  5'- cGCGCCaacagggGCGCGUAGGCgcgGCGCAgGCUggUCa -3'
miRNA:   3'- -CGCGG-------CGCGUAUUCG---UGCGUgCGG--AG- -5'
5591 3' -57.8 NC_001806.1 + 145729 0.74 0.395122
Target:  5'- -gGCCGCGCG--GGUGCGCGUGCCUUu -3'
miRNA:   3'- cgCGGCGCGUauUCGUGCGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 49114 0.74 0.384283
Target:  5'- cGCGggGCGCAggAGGCGCGCauccacccgcccccGCGCCUCg -3'
miRNA:   3'- -CGCggCGCGUa-UUCGUGCG--------------UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 147741 0.74 0.378529
Target:  5'- -gGCCGCGCGgGGGCGCGCGgGUCcCg -3'
miRNA:   3'- cgCGGCGCGUaUUCGUGCGUgCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 151142 0.74 0.370409
Target:  5'- cGC-CCGCGCGUcgcAGGCGCagGCGCGCCa- -3'
miRNA:   3'- -CGcGGCGCGUA---UUCGUG--CGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 50669 0.74 0.370409
Target:  5'- gGCGCCGggacgaCGCGgcGGcCACGCGCGCCa- -3'
miRNA:   3'- -CGCGGC------GCGUauUC-GUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 26779 0.74 0.361616
Target:  5'- cCGCCuGCGCGUcaccgcgGAGCACcugGCGCGCCUg -3'
miRNA:   3'- cGCGG-CGCGUA-------UUCGUG---CGUGCGGAg -5'
5591 3' -57.8 NC_001806.1 + 24369 0.75 0.346004
Target:  5'- uCG-CGCGCGUGGaggccgcGCACGCGCGCCUg -3'
miRNA:   3'- cGCgGCGCGUAUU-------CGUGCGUGCGGAg -5'
5591 3' -57.8 NC_001806.1 + 118526 1.1 0.001424
Target:  5'- cGCGCCGCGCAUAAGCACGCACGCCUCc -3'
miRNA:   3'- -CGCGGCGCGUAUUCGUGCGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 35570 0.75 0.31697
Target:  5'- gGCGCCGCGCcgAAcgacGUGCGCAgCGCCg- -3'
miRNA:   3'- -CGCGGCGCGuaUU----CGUGCGU-GCGGag -5'
5591 3' -57.8 NC_001806.1 + 99948 0.76 0.302808
Target:  5'- cGgGCCGCGCGccggGAgucgaccccGCGCgGCGCGCCUCg -3'
miRNA:   3'- -CgCGGCGCGUa---UU---------CGUG-CGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 1561 0.77 0.245112
Target:  5'- cGgGCCGgGCc--GGCGCGCAcCGCCUCg -3'
miRNA:   3'- -CgCGGCgCGuauUCGUGCGU-GCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 106549 0.78 0.217184
Target:  5'- aUGCCGCGCugguGCGCGCGCGCUa- -3'
miRNA:   3'- cGCGGCGCGuauuCGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 33722 0.79 0.206797
Target:  5'- cUGCCGCuuGUGAGUGCGCGCGCCg- -3'
miRNA:   3'- cGCGGCGcgUAUUCGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 137968 0.79 0.192024
Target:  5'- aCGCUGCGCG--AGUACGCcCGCCUCu -3'
miRNA:   3'- cGCGGCGCGUauUCGUGCGuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 3225 0.79 0.192024
Target:  5'- cGCGCagGCGCAUGAGCACcaGCGCGUCg- -3'
miRNA:   3'- -CGCGg-CGCGUAUUCGUG--CGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 152033 0.79 0.182696
Target:  5'- cCGCCGCGC----GCGCGCACGCCg- -3'
miRNA:   3'- cGCGGCGCGuauuCGUGCGUGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.