miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 323 0.79 0.182696
Target:  5'- cCGCCGCGC----GCGCGCACGCCg- -3'
miRNA:   3'- cGCGGCGCGuauuCGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 350 0.68 0.704348
Target:  5'- cCGCCGCccgccuuuuuuGCGc--GCGCGCGCGCC-Cg -3'
miRNA:   3'- cGCGGCG-----------CGUauuCGUGCGUGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 1332 0.66 0.84204
Target:  5'- cCGCCGCGgGggcguGGCcaaGCcCGCCUCc -3'
miRNA:   3'- cGCGGCGCgUau---UCGug-CGuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 1477 0.66 0.833882
Target:  5'- uCGCCGCGCAgcaccAGCGgGgGgGCgUCg -3'
miRNA:   3'- cGCGGCGCGUau---UCGUgCgUgCGgAG- -5'
5591 3' -57.8 NC_001806.1 + 1561 0.77 0.245112
Target:  5'- cGgGCCGgGCc--GGCGCGCAcCGCCUCg -3'
miRNA:   3'- -CgCGGCgCGuauUCGUGCGU-GCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 1615 0.69 0.674212
Target:  5'- aGCGgCGCGCccAGGCcccaGCGCGCGCaggCg -3'
miRNA:   3'- -CGCgGCGCGuaUUCG----UGCGUGCGga-G- -5'
5591 3' -57.8 NC_001806.1 + 1785 0.7 0.623415
Target:  5'- cGUGuCCGgGCcgAAGCGCGUGCGCacgCg -3'
miRNA:   3'- -CGC-GGCgCGuaUUCGUGCGUGCGga-G- -5'
5591 3' -57.8 NC_001806.1 + 1846 0.69 0.684303
Target:  5'- aGCgGCgGCGCGUcgggguacAGGCGCGCgugcGCGgCCUCc -3'
miRNA:   3'- -CG-CGgCGCGUA--------UUCGUGCG----UGC-GGAG- -5'
5591 3' -57.8 NC_001806.1 + 1935 0.66 0.817028
Target:  5'- cGUGCgGCGCAgguccCGCGC-CGCCg- -3'
miRNA:   3'- -CGCGgCGCGUauuc-GUGCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 1964 0.66 0.814441
Target:  5'- aGCGCacgGCGCAcu-GCACggcgggcagcagcuGCACGCCa- -3'
miRNA:   3'- -CGCGg--CGCGUauuCGUG--------------CGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 2145 0.66 0.84204
Target:  5'- cGCGUgGacaGCAgcAGCACGCccuguGCGCC-Ca -3'
miRNA:   3'- -CGCGgCg--CGUauUCGUGCG-----UGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 2634 0.68 0.694351
Target:  5'- aCGgCGCGCGggGAGCA-GUAgGCCUCc -3'
miRNA:   3'- cGCgGCGCGUa-UUCGUgCGUgCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 2781 0.69 0.664088
Target:  5'- uGCGCCGCgGCGgcccgGGGCGcCGCGgGCUg- -3'
miRNA:   3'- -CGCGGCG-CGUa----UUCGU-GCGUgCGGag -5'
5591 3' -57.8 NC_001806.1 + 3009 0.7 0.613244
Target:  5'- cCGCCaGCGCGUcGGCggcguccgguGCGCugGCCg- -3'
miRNA:   3'- cGCGG-CGCGUAuUCG----------UGCGugCGGag -5'
5591 3' -57.8 NC_001806.1 + 3225 0.79 0.192024
Target:  5'- cGCGCagGCGCAUGAGCACcaGCGCGUCg- -3'
miRNA:   3'- -CGCGg-CGCGUAUUCGUG--CGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 3263 0.66 0.833056
Target:  5'- cGCaGCuCGCGCAgccacGCGCGCaggcgggGCGCgUCg -3'
miRNA:   3'- -CG-CG-GCGCGUauu--CGUGCG-------UGCGgAG- -5'
5591 3' -57.8 NC_001806.1 + 3344 0.68 0.704348
Target:  5'- -gGCCGCGgg-GGGCugGCGgGCCg- -3'
miRNA:   3'- cgCGGCGCguaUUCGugCGUgCGGag -5'
5591 3' -57.8 NC_001806.1 + 3595 0.69 0.664088
Target:  5'- gGCGCCGUacccgGCG--GGCAC-CGCGCgCUCg -3'
miRNA:   3'- -CGCGGCG-----CGUauUCGUGcGUGCG-GAG- -5'
5591 3' -57.8 NC_001806.1 + 3667 0.67 0.762747
Target:  5'- uGCGCCgGCGCcgGGGCucccCGCggcccccgucaGCGCCg- -3'
miRNA:   3'- -CGCGG-CGCGuaUUCGu---GCG-----------UGCGGag -5'
5591 3' -57.8 NC_001806.1 + 3716 0.73 0.420001
Target:  5'- cGCGCCaacagggGCGCGUAGGCgcgGCGCAgGCUggUCa -3'
miRNA:   3'- -CGCGG-------CGCGUAUUCG---UGCGUgCGG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.