miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 4063 0.67 0.794134
Target:  5'- gGCGCCcacacggccgccgggGCGCccgAGGCcucgaaccgGCGuCGCGCCUCc -3'
miRNA:   3'- -CGCGG---------------CGCGua-UUCG---------UGC-GUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 4388 0.67 0.772132
Target:  5'- uCGCCGcCGCccgGGGCuuggGCGCG-GCCUCg -3'
miRNA:   3'- cGCGGC-GCGua-UUCG----UGCGUgCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 4468 0.71 0.527067
Target:  5'- gGCGCCGCGCucgAcggaccccgcccgacGGC-C-CGCGCCUCg -3'
miRNA:   3'- -CGCGGCGCGua-U---------------UCGuGcGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 4710 0.66 0.79951
Target:  5'- cGCGCCGCGUAgcgGGGCcucccguuCGCG-GCCcCg -3'
miRNA:   3'- -CGCGGCGCGUa--UUCGu-------GCGUgCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 8742 0.67 0.790522
Target:  5'- aUGCCGaCGCAgcgGGUGCGUcugcgucgACGCCUUa -3'
miRNA:   3'- cGCGGC-GCGUau-UCGUGCG--------UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 9657 0.66 0.79951
Target:  5'- cCGCC-CGCc-AGGCACGCcuGCGCCa- -3'
miRNA:   3'- cGCGGcGCGuaUUCGUGCG--UGCGGag -5'
5591 3' -57.8 NC_001806.1 + 9826 0.66 0.84204
Target:  5'- cGCGCCGCGCugugggagGGGCuguuccaccaccGCGUuccgguacuGCGCCg- -3'
miRNA:   3'- -CGCGGCGCGua------UUCG------------UGCG---------UGCGGag -5'
5591 3' -57.8 NC_001806.1 + 10721 0.66 0.817028
Target:  5'- uCGCCaGCGgGaccgGAGCGCGCAUGCa-- -3'
miRNA:   3'- cGCGG-CGCgUa---UUCGUGCGUGCGgag -5'
5591 3' -57.8 NC_001806.1 + 19549 0.68 0.724152
Target:  5'- aCGCCGCGCuuuuacacaAGGCGCaaaaGCGCCUg -3'
miRNA:   3'- cGCGGCGCGua-------UUCGUGcg--UGCGGAg -5'
5591 3' -57.8 NC_001806.1 + 20187 0.66 0.825542
Target:  5'- gGgGCCgGCGCGgagucGGGCACG-GCGCCa- -3'
miRNA:   3'- -CgCGG-CGCGUa----UUCGUGCgUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 21350 0.73 0.438598
Target:  5'- uCGCCGCGaCAgcuGGCucUGCugGCCUCc -3'
miRNA:   3'- cGCGGCGC-GUau-UCGu-GCGugCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 21788 0.66 0.817028
Target:  5'- aGCGCgGCGCcgGcAGCccccggGCGgACGCCg- -3'
miRNA:   3'- -CGCGgCGCGuaU-UCG------UGCgUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 22214 0.71 0.551762
Target:  5'- aCGCCGCGCAgcAGUACGCccugaucACGCg-- -3'
miRNA:   3'- cGCGGCGCGUauUCGUGCG-------UGCGgag -5'
5591 3' -57.8 NC_001806.1 + 22520 0.7 0.572771
Target:  5'- uGCGCCGCGCcUAcgcgccccuguuGGCGCGCgagaacgcgGCGCUg- -3'
miRNA:   3'- -CGCGGCGCGuAU------------UCGUGCG---------UGCGGag -5'
5591 3' -57.8 NC_001806.1 + 22588 0.69 0.664088
Target:  5'- gGCGCCgGCGCAgaugacgagGGGguCGC-CGCCgUCg -3'
miRNA:   3'- -CGCGG-CGCGUa--------UUCguGCGuGCGG-AG- -5'
5591 3' -57.8 NC_001806.1 + 22625 0.68 0.724152
Target:  5'- cCGCCGcCGCAccgggcGAGCGCGCGgugccCGCCg- -3'
miRNA:   3'- cGCGGC-GCGUa-----UUCGUGCGU-----GCGGag -5'
5591 3' -57.8 NC_001806.1 + 22666 0.66 0.805713
Target:  5'- gGCGCCGCGgGgauccucgccgcccUGGGgcggcuguccgcCGCGCcCGCCUCc -3'
miRNA:   3'- -CGCGGCGCgU--------------AUUC------------GUGCGuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 22778 0.68 0.733941
Target:  5'- gGCGCCGCGCccAGGCcggcCGCGuggccgucgagUGCCUg -3'
miRNA:   3'- -CGCGGCGCGuaUUCGu---GCGU-----------GCGGAg -5'
5591 3' -57.8 NC_001806.1 + 22948 0.71 0.523153
Target:  5'- cCGCCGCGCc---GCACGCcgacGCGCCcCg -3'
miRNA:   3'- cGCGGCGCGuauuCGUGCG----UGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 23080 0.66 0.825542
Target:  5'- cCGCCGUGCgcgccGUGAGCcUGguCGCCg- -3'
miRNA:   3'- cGCGGCGCG-----UAUUCGuGCguGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.