miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 131888 0.66 0.825542
Target:  5'- cGCGCCGCGacgacGC-CGgC-CGCCUCc -3'
miRNA:   3'- -CGCGGCGCguauuCGuGC-GuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 53020 0.66 0.79951
Target:  5'- cGC-CCGcCGCA-AAGCcacccACGC-CGCCUCg -3'
miRNA:   3'- -CGcGGC-GCGUaUUCG-----UGCGuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 21788 0.66 0.817028
Target:  5'- aGCGCgGCGCcgGcAGCccccggGCGgACGCCg- -3'
miRNA:   3'- -CGCGgCGCGuaU-UCG------UGCgUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 119135 0.66 0.84204
Target:  5'- -aGCaCGCGCAU---CAUGCGCGUCUg -3'
miRNA:   3'- cgCG-GCGCGUAuucGUGCGUGCGGAg -5'
5591 3' -57.8 NC_001806.1 + 67059 0.66 0.79951
Target:  5'- gGCGUCGCGCGcgucguacgAGGCGgCaCACGCCg- -3'
miRNA:   3'- -CGCGGCGCGUa--------UUCGU-GcGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 82604 0.66 0.833882
Target:  5'- cGUcCCGCcCAacAGCACGCGCGUCa- -3'
miRNA:   3'- -CGcGGCGcGUauUCGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 2145 0.66 0.84204
Target:  5'- cGCGUgGacaGCAgcAGCACGCccuguGCGCC-Ca -3'
miRNA:   3'- -CGCGgCg--CGUauUCGUGCG-----UGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 20187 0.66 0.825542
Target:  5'- gGgGCCgGCGCGgagucGGGCACG-GCGCCa- -3'
miRNA:   3'- -CgCGG-CGCGUa----UUCGUGCgUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 37825 0.66 0.814441
Target:  5'- uCGCCaGCGuCAUuAGCggggggggugcuugGCGCACGCCcCg -3'
miRNA:   3'- cGCGG-CGC-GUAuUCG--------------UGCGUGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 23273 0.66 0.79951
Target:  5'- cGCGCCGCGgG-AGGgGCGCaaGCGCa-- -3'
miRNA:   3'- -CGCGGCGCgUaUUCgUGCG--UGCGgag -5'
5591 3' -57.8 NC_001806.1 + 144348 0.66 0.817028
Target:  5'- cGCcCCGCGCcgGuccauuaagGGCGCGCGUGCC-Cg -3'
miRNA:   3'- -CGcGGCGCGuaU---------UCGUGCGUGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 132675 0.66 0.84204
Target:  5'- aCGCCGCGCuccUGGGgGC-CugGCC-Cg -3'
miRNA:   3'- cGCGGCGCGu--AUUCgUGcGugCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 108536 0.66 0.84204
Target:  5'- gGCgGCC-CGCGUGcGGCugGCcGCGCC-Cg -3'
miRNA:   3'- -CG-CGGcGCGUAU-UCGugCG-UGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 143637 0.66 0.817028
Target:  5'- aGCGCCcCGUcc-GGCGCGC-CGCCc- -3'
miRNA:   3'- -CGCGGcGCGuauUCGUGCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 25912 0.66 0.79951
Target:  5'- gGCGguCCGgGCGgcguGCGCGCGCGCg-- -3'
miRNA:   3'- -CGC--GGCgCGUauu-CGUGCGUGCGgag -5'
5591 3' -57.8 NC_001806.1 + 1964 0.66 0.814441
Target:  5'- aGCGCacgGCGCAcu-GCACggcgggcagcagcuGCACGCCa- -3'
miRNA:   3'- -CGCGg--CGCGUauuCGUG--------------CGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 3263 0.66 0.833056
Target:  5'- cGCaGCuCGCGCAgccacGCGCGCaggcgggGCGCgUCg -3'
miRNA:   3'- -CG-CG-GCGCGUauu--CGUGCG-------UGCGgAG- -5'
5591 3' -57.8 NC_001806.1 + 1332 0.66 0.84204
Target:  5'- cCGCCGCGgGggcguGGCcaaGCcCGCCUCc -3'
miRNA:   3'- cGCGGCGCgUau---UCGug-CGuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 24456 0.66 0.833882
Target:  5'- uGCGCaCGCGCuucGGCcCGgaCACGCCg- -3'
miRNA:   3'- -CGCG-GCGCGuauUCGuGC--GUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 125841 0.66 0.817028
Target:  5'- cGCGCCGCGgGcccccGGCcgccGCGgACGCCg- -3'
miRNA:   3'- -CGCGGCGCgUau---UCG----UGCgUGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.