miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 131283 0.73 0.455822
Target:  5'- cGUGcCCGCGUggGGGCgcuguuuGCGCACGCaCUCa -3'
miRNA:   3'- -CGC-GGCGCGuaUUCG-------UGCGUGCG-GAG- -5'
5591 3' -57.8 NC_001806.1 + 130802 0.72 0.465959
Target:  5'- uGUGCCuGUGCAgcaccauGGC-CGCGCGCCUg -3'
miRNA:   3'- -CGCGG-CGCGUau-----UCGuGCGUGCGGAg -5'
5591 3' -57.8 NC_001806.1 + 88845 0.72 0.465959
Target:  5'- gGCGuccauaaaCCGCGCGUGGaacugggccGCGCGCAUGCCg- -3'
miRNA:   3'- -CGC--------GGCGCGUAUU---------CGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 40579 0.72 0.484683
Target:  5'- aGCGCCGCGgGUcGGCGUGCGCGgCg- -3'
miRNA:   3'- -CGCGGCGCgUAuUCGUGCGUGCgGag -5'
5591 3' -57.8 NC_001806.1 + 82887 0.72 0.494179
Target:  5'- -gGCCGCGuCAU--GCGCGC-CGUCUCg -3'
miRNA:   3'- cgCGGCGC-GUAuuCGUGCGuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 24279 0.72 0.494179
Target:  5'- cCGCCGUGCAgugcgccGUGCGCugGCCg- -3'
miRNA:   3'- cGCGGCGCGUauu----CGUGCGugCGGag -5'
5591 3' -57.8 NC_001806.1 + 63215 0.71 0.513419
Target:  5'- cGUGCUGuCGauCAUGauguucaccaucAGCACGCACGCCUg -3'
miRNA:   3'- -CGCGGC-GC--GUAU------------UCGUGCGUGCGGAg -5'
5591 3' -57.8 NC_001806.1 + 140132 0.71 0.513419
Target:  5'- aCGCCagGCGCggcacacgggGUGGGCGC-CGCGCCUCc -3'
miRNA:   3'- cGCGG--CGCG----------UAUUCGUGcGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 84122 0.71 0.523153
Target:  5'- cCGCCaguccugggaaGCGCAUcgcgGGGCACGCACGCg-- -3'
miRNA:   3'- cGCGG-----------CGCGUA----UUCGUGCGUGCGgag -5'
5591 3' -57.8 NC_001806.1 + 77338 0.71 0.523153
Target:  5'- aCGCCGCauggGCuuauauAGCGCGUACGCCa- -3'
miRNA:   3'- cGCGGCG----CGuau---UCGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 22948 0.71 0.523153
Target:  5'- cCGCCGCGCc---GCACGCcgacGCGCCcCg -3'
miRNA:   3'- cGCGGCGCGuauuCGUGCG----UGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 59971 0.71 0.523153
Target:  5'- uGCGCCgGCGC---GGCACcucuCugGCCUCg -3'
miRNA:   3'- -CGCGG-CGCGuauUCGUGc---GugCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 41431 0.71 0.523153
Target:  5'- cGCGCCGUgGUcgGGGUGCGC-CGCCg- -3'
miRNA:   3'- -CGCGGCG-CGuaUUCGUGCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 4468 0.71 0.527067
Target:  5'- gGCGCCGCGCucgAcggaccccgcccgacGGC-C-CGCGCCUCg -3'
miRNA:   3'- -CGCGGCGCGua-U---------------UCGuGcGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 75798 0.71 0.532958
Target:  5'- gGCGCUG-GCG--GGCACGCACGgCUa -3'
miRNA:   3'- -CGCGGCgCGUauUCGUGCGUGCgGAg -5'
5591 3' -57.8 NC_001806.1 + 22214 0.71 0.551762
Target:  5'- aCGCCGCGCAgcAGUACGCccugaucACGCg-- -3'
miRNA:   3'- cGCGGCGCGUauUCGUGCG-------UGCGgag -5'
5591 3' -57.8 NC_001806.1 + 132175 0.71 0.552757
Target:  5'- cGCGCgGCugGCGUGGGCGCGCcugGCgGCCa- -3'
miRNA:   3'- -CGCGgCG--CGUAUUCGUGCG---UG-CGGag -5'
5591 3' -57.8 NC_001806.1 + 123004 0.71 0.552757
Target:  5'- uCGCCGCcCAUGgugaGGCcCGCcgACGCCUCg -3'
miRNA:   3'- cGCGGCGcGUAU----UCGuGCG--UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 144209 0.7 0.571766
Target:  5'- cCGCCGCcgacaccGCA-GAGCcgGCGCGCGCaCUCa -3'
miRNA:   3'- cGCGGCG-------CGUaUUCG--UGCGUGCG-GAG- -5'
5591 3' -57.8 NC_001806.1 + 50003 0.7 0.572771
Target:  5'- cGCGCCuucaCGCGgAGGCGCGCGgGUCUg -3'
miRNA:   3'- -CGCGGc---GCGUaUUCGUGCGUgCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.