miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 24667 0.66 0.817028
Target:  5'- gGCGCUgggGCGCG-AGGCgguGCGCGCCg- -3'
miRNA:   3'- -CGCGG---CGCGUaUUCGug-CGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 35134 0.66 0.817028
Target:  5'- cGCgGCCcuCGguUGGGCgACGCAUGCCa- -3'
miRNA:   3'- -CG-CGGc-GCguAUUCG-UGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 143637 0.66 0.817028
Target:  5'- aGCGCCcCGUcc-GGCGCGC-CGCCc- -3'
miRNA:   3'- -CGCGGcGCGuauUCGUGCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 10721 0.66 0.817028
Target:  5'- uCGCCaGCGgGaccgGAGCGCGCAUGCa-- -3'
miRNA:   3'- cGCGG-CGCgUa---UUCGUGCGUGCGgag -5'
5591 3' -57.8 NC_001806.1 + 1935 0.66 0.817028
Target:  5'- cGUGCgGCGCAgguccCGCGC-CGCCg- -3'
miRNA:   3'- -CGCGgCGCGUauuc-GUGCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 125841 0.66 0.817028
Target:  5'- cGCGCCGCGgGcccccGGCcgccGCGgACGCCg- -3'
miRNA:   3'- -CGCGGCGCgUau---UCG----UGCgUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 88969 0.66 0.817028
Target:  5'- aCGCCGCccCAcAGGCGCGaGCGCCg- -3'
miRNA:   3'- cGCGGCGc-GUaUUCGUGCgUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 144348 0.66 0.817028
Target:  5'- cGCcCCGCGCcgGuccauuaagGGCGCGCGUGCC-Cg -3'
miRNA:   3'- -CGcGGCGCGuaU---------UCGUGCGUGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 37825 0.66 0.814441
Target:  5'- uCGCCaGCGuCAUuAGCggggggggugcuugGCGCACGCCcCg -3'
miRNA:   3'- cGCGG-CGC-GUAuUCG--------------UGCGUGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 1964 0.66 0.814441
Target:  5'- aGCGCacgGCGCAcu-GCACggcgggcagcagcuGCACGCCa- -3'
miRNA:   3'- -CGCGg--CGCGUauuCGUG--------------CGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 147514 0.66 0.808348
Target:  5'- gGCGCCGCGgGaGGGCcCGUGCccacCCUCc -3'
miRNA:   3'- -CGCGGCGCgUaUUCGuGCGUGc---GGAG- -5'
5591 3' -57.8 NC_001806.1 + 22666 0.66 0.805713
Target:  5'- gGCGCCGCGgGgauccucgccgcccUGGGgcggcuguccgcCGCGCcCGCCUCc -3'
miRNA:   3'- -CGCGGCGCgU--------------AUUC------------GUGCGuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 23273 0.66 0.79951
Target:  5'- cGCGCCGCGgG-AGGgGCGCaaGCGCa-- -3'
miRNA:   3'- -CGCGGCGCgUaUUCgUGCG--UGCGgag -5'
5591 3' -57.8 NC_001806.1 + 53020 0.66 0.79951
Target:  5'- cGC-CCGcCGCA-AAGCcacccACGC-CGCCUCg -3'
miRNA:   3'- -CGcGGC-GCGUaUUCG-----UGCGuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 25912 0.66 0.79951
Target:  5'- gGCGguCCGgGCGgcguGCGCGCGCGCg-- -3'
miRNA:   3'- -CGC--GGCgCGUauu-CGUGCGUGCGgag -5'
5591 3' -57.8 NC_001806.1 + 67059 0.66 0.79951
Target:  5'- gGCGUCGCGCGcgucguacgAGGCGgCaCACGCCg- -3'
miRNA:   3'- -CGCGGCGCGUa--------UUCGU-GcGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 4710 0.66 0.79951
Target:  5'- cGCGCCGCGUAgcgGGGCcucccguuCGCG-GCCcCg -3'
miRNA:   3'- -CGCGGCGCGUa--UUCGu-------GCGUgCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 121417 0.66 0.79951
Target:  5'- cGUGCUGCGCcuUGGGCcCGgGgGCCUg -3'
miRNA:   3'- -CGCGGCGCGu-AUUCGuGCgUgCGGAg -5'
5591 3' -57.8 NC_001806.1 + 9657 0.66 0.79951
Target:  5'- cCGCC-CGCc-AGGCACGCcuGCGCCa- -3'
miRNA:   3'- cGCGGcGCGuaUUCGUGCG--UGCGGag -5'
5591 3' -57.8 NC_001806.1 + 76837 0.66 0.79951
Target:  5'- cGgGCCuccuaCGCGacAGgGCGCGCGCCUg -3'
miRNA:   3'- -CgCGGc----GCGUauUCgUGCGUGCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.