miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 67059 0.66 0.79951
Target:  5'- gGCGUCGCGCGcgucguacgAGGCGgCaCACGCCg- -3'
miRNA:   3'- -CGCGGCGCGUa--------UUCGU-GcGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 75431 0.67 0.794134
Target:  5'- uGCGCCGgGCcgccaaccaaccgGAGgGagaGCAUGCCUCc -3'
miRNA:   3'- -CGCGGCgCGua-----------UUCgUg--CGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 4063 0.67 0.794134
Target:  5'- gGCGCCcacacggccgccgggGCGCccgAGGCcucgaaccgGCGuCGCGCCUCc -3'
miRNA:   3'- -CGCGG---------------CGCGua-UUCG---------UGC-GUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 131775 0.67 0.790522
Target:  5'- aCGCCGCaGgGgagGGuCGCGCGCGCUUUg -3'
miRNA:   3'- cGCGGCG-CgUau-UC-GUGCGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 41854 0.67 0.790522
Target:  5'- cGCGUaCGUGCG--AGCGCGCAgguagGCCUUg -3'
miRNA:   3'- -CGCG-GCGCGUauUCGUGCGUg----CGGAG- -5'
5591 3' -57.8 NC_001806.1 + 23713 0.67 0.790522
Target:  5'- uCGCCGCGCGgu-GCGCcggGCcCGCCc- -3'
miRNA:   3'- cGCGGCGCGUauuCGUG---CGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 73315 0.67 0.790522
Target:  5'- uCGCCGCGUGUucGCG-GCucaccaucaGCGCCUUa -3'
miRNA:   3'- cGCGGCGCGUAuuCGUgCG---------UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 52052 0.67 0.790522
Target:  5'- gGCGCC-CGCGgaaacGUuCGCGCGCCa- -3'
miRNA:   3'- -CGCGGcGCGUauu--CGuGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 8742 0.67 0.790522
Target:  5'- aUGCCGaCGCAgcgGGUGCGUcugcgucgACGCCUUa -3'
miRNA:   3'- cGCGGC-GCGUau-UCGUGCG--------UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 106877 0.67 0.790522
Target:  5'- gGCGCCGaGCA-GGGCcCGCGCcccCCUCu -3'
miRNA:   3'- -CGCGGCgCGUaUUCGuGCGUGc--GGAG- -5'
5591 3' -57.8 NC_001806.1 + 84967 0.67 0.790522
Target:  5'- aGCGCCaGCGCuaucgGGGCcuuuuCGC-CGcCCUCg -3'
miRNA:   3'- -CGCGG-CGCGua---UUCGu----GCGuGC-GGAG- -5'
5591 3' -57.8 NC_001806.1 + 24409 0.67 0.785061
Target:  5'- cGCGCCGCcgcugcgccugugccGCGgcGGCaACGUGCGCUa- -3'
miRNA:   3'- -CGCGGCG---------------CGUauUCG-UGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 150676 0.67 0.781393
Target:  5'- cCGCCGCGCu--GGCG-GC-CGCCg- -3'
miRNA:   3'- cGCGGCGCGuauUCGUgCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 127789 0.67 0.781393
Target:  5'- cGCGauCCGCGCAUGGaacUGCGUACGCgCUUg -3'
miRNA:   3'- -CGC--GGCGCGUAUUc--GUGCGUGCG-GAG- -5'
5591 3' -57.8 NC_001806.1 + 74481 0.67 0.781393
Target:  5'- cGCGCCGCaGCucGGGuCugGCcgagcugcgGCGCUUCg -3'
miRNA:   3'- -CGCGGCG-CGuaUUC-GugCG---------UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 23473 0.67 0.781393
Target:  5'- cCGCCGCgGCGcAGGCcCGCccGCGCCcCg -3'
miRNA:   3'- cGCGGCG-CGUaUUCGuGCG--UGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 148003 0.67 0.781393
Target:  5'- gGCGCCGCggcucgcgacugGCGgGAGC-CGC-CGCCg- -3'
miRNA:   3'- -CGCGGCG------------CGUaUUCGuGCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 147561 0.67 0.781393
Target:  5'- -aGCCGCGCGccaccgucGCACGCGC-CCg- -3'
miRNA:   3'- cgCGGCGCGUauu-----CGUGCGUGcGGag -5'
5591 3' -57.8 NC_001806.1 + 141642 0.67 0.781393
Target:  5'- -gGCgGCaCGUucGCGCGCACGCUa- -3'
miRNA:   3'- cgCGgCGcGUAuuCGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 103665 0.67 0.781393
Target:  5'- aGCGCCGCGauccucuUAAGCACcccccCGC-CCUCc -3'
miRNA:   3'- -CGCGGCGCgu-----AUUCGUGc----GUGcGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.