Results 21 - 40 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5591 | 3' | -57.8 | NC_001806.1 | + | 9826 | 0.66 | 0.84204 |
Target: 5'- cGCGCCGCGCugugggagGGGCuguuccaccaccGCGUuccgguacuGCGCCg- -3' miRNA: 3'- -CGCGGCGCGua------UUCG------------UGCG---------UGCGGag -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 52720 | 0.75 | 0.339138 |
Target: 5'- gGCGCCGCGCGgacGGCGCGgGgccccCGCUUCc -3' miRNA: 3'- -CGCGGCGCGUau-UCGUGCgU-----GCGGAG- -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 323 | 0.79 | 0.182696 |
Target: 5'- cCGCCGCGC----GCGCGCACGCCg- -3' miRNA: 3'- cGCGGCGCGuauuCGUGCGUGCGGag -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 152033 | 0.79 | 0.182696 |
Target: 5'- cCGCCGCGC----GCGCGCACGCCg- -3' miRNA: 3'- cGCGGCGCGuauuCGUGCGUGCGGag -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 3225 | 0.79 | 0.192024 |
Target: 5'- cGCGCagGCGCAUGAGCACcaGCGCGUCg- -3' miRNA: 3'- -CGCGg-CGCGUAUUCGUG--CGUGCGGag -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 137968 | 0.79 | 0.192024 |
Target: 5'- aCGCUGCGCG--AGUACGCcCGCCUCu -3' miRNA: 3'- cGCGGCGCGUauUCGUGCGuGCGGAG- -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 33722 | 0.79 | 0.206797 |
Target: 5'- cUGCCGCuuGUGAGUGCGCGCGCCg- -3' miRNA: 3'- cGCGGCGcgUAUUCGUGCGUGCGGag -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 106549 | 0.78 | 0.217184 |
Target: 5'- aUGCCGCGCugguGCGCGCGCGCUa- -3' miRNA: 3'- cGCGGCGCGuauuCGUGCGUGCGGag -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 1561 | 0.77 | 0.245112 |
Target: 5'- cGgGCCGgGCc--GGCGCGCAcCGCCUCg -3' miRNA: 3'- -CgCGGCgCGuauUCGUGCGU-GCGGAG- -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 99948 | 0.76 | 0.302808 |
Target: 5'- cGgGCCGCGCGccggGAgucgaccccGCGCgGCGCGCCUCg -3' miRNA: 3'- -CgCGGCGCGUa---UU---------CGUG-CGUGCGGAG- -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 35570 | 0.75 | 0.31697 |
Target: 5'- gGCGCCGCGCcgAAcgacGUGCGCAgCGCCg- -3' miRNA: 3'- -CGCGGCGCGuaUU----CGUGCGU-GCGGag -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 118526 | 1.1 | 0.001424 |
Target: 5'- cGCGCCGCGCAUAAGCACGCACGCCUCc -3' miRNA: 3'- -CGCGGCGCGUAUUCGUGCGUGCGGAG- -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 24369 | 0.75 | 0.346004 |
Target: 5'- uCG-CGCGCGUGGaggccgcGCACGCGCGCCUg -3' miRNA: 3'- cGCgGCGCGUAUU-------CGUGCGUGCGGAg -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 26779 | 0.74 | 0.361616 |
Target: 5'- cCGCCuGCGCGUcaccgcgGAGCACcugGCGCGCCUg -3' miRNA: 3'- cGCGG-CGCGUA-------UUCGUG---CGUGCGGAg -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 50669 | 0.74 | 0.370409 |
Target: 5'- gGCGCCGggacgaCGCGgcGGcCACGCGCGCCa- -3' miRNA: 3'- -CGCGGC------GCGUauUC-GUGCGUGCGGag -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 151142 | 0.74 | 0.370409 |
Target: 5'- cGC-CCGCGCGUcgcAGGCGCagGCGCGCCa- -3' miRNA: 3'- -CGcGGCGCGUA---UUCGUG--CGUGCGGag -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 147741 | 0.74 | 0.378529 |
Target: 5'- -gGCCGCGCGgGGGCGCGCGgGUCcCg -3' miRNA: 3'- cgCGGCGCGUaUUCGUGCGUgCGGaG- -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 49114 | 0.74 | 0.384283 |
Target: 5'- cGCGggGCGCAggAGGCGCGCauccacccgcccccGCGCCUCg -3' miRNA: 3'- -CGCggCGCGUa-UUCGUGCG--------------UGCGGAG- -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 145729 | 0.74 | 0.395122 |
Target: 5'- -gGCCGCGCG--GGUGCGCGUGCCUUu -3' miRNA: 3'- cgCGGCGCGUauUCGUGCGUGCGGAG- -5' |
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5591 | 3' | -57.8 | NC_001806.1 | + | 3716 | 0.73 | 0.420001 |
Target: 5'- cGCGCCaacagggGCGCGUAGGCgcgGCGCAgGCUggUCa -3' miRNA: 3'- -CGCGG-------CGCGUAUUCG---UGCGUgCGG--AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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