miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 132675 0.66 0.84204
Target:  5'- aCGCCGCGCuccUGGGgGC-CugGCC-Cg -3'
miRNA:   3'- cGCGGCGCGu--AUUCgUGcGugCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 132175 0.71 0.552757
Target:  5'- cGCGCgGCugGCGUGGGCGCGCcugGCgGCCa- -3'
miRNA:   3'- -CGCGgCG--CGUAUUCGUGCG---UG-CGGag -5'
5591 3' -57.8 NC_001806.1 + 131888 0.66 0.825542
Target:  5'- cGCGCCGCGacgacGC-CGgC-CGCCUCc -3'
miRNA:   3'- -CGCGGCGCguauuCGuGC-GuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 131775 0.67 0.790522
Target:  5'- aCGCCGCaGgGgagGGuCGCGCGCGCUUUg -3'
miRNA:   3'- cGCGGCG-CgUau-UC-GUGCGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 131283 0.73 0.455822
Target:  5'- cGUGcCCGCGUggGGGCgcuguuuGCGCACGCaCUCa -3'
miRNA:   3'- -CGC-GGCGCGuaUUCG-------UGCGUGCG-GAG- -5'
5591 3' -57.8 NC_001806.1 + 130802 0.72 0.465959
Target:  5'- uGUGCCuGUGCAgcaccauGGC-CGCGCGCCUg -3'
miRNA:   3'- -CGCGG-CGCGUau-----UCGuGCGUGCGGAg -5'
5591 3' -57.8 NC_001806.1 + 129078 0.67 0.772132
Target:  5'- aGCGCCccgacggccagGUGCGUGacuguGGUcCGCGCGCCa- -3'
miRNA:   3'- -CGCGG-----------CGCGUAU-----UCGuGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 127899 0.67 0.753247
Target:  5'- gGCGCgGgUGCAgcgGAGCACGgcCAUGCCg- -3'
miRNA:   3'- -CGCGgC-GCGUa--UUCGUGC--GUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 127789 0.67 0.781393
Target:  5'- cGCGauCCGCGCAUGGaacUGCGUACGCgCUUg -3'
miRNA:   3'- -CGC--GGCGCGUAUUc--GUGCGUGCG-GAG- -5'
5591 3' -57.8 NC_001806.1 + 125841 0.66 0.817028
Target:  5'- cGCGCCGCGgGcccccGGCcgccGCGgACGCCg- -3'
miRNA:   3'- -CGCGGCGCgUau---UCG----UGCgUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 125505 0.67 0.762747
Target:  5'- cGgGCCGCGuCGccGGCACuuucugACGCCUCa -3'
miRNA:   3'- -CgCGGCGC-GUauUCGUGcg----UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 123004 0.71 0.552757
Target:  5'- uCGCCGCcCAUGgugaGGCcCGCcgACGCCUCg -3'
miRNA:   3'- cGCGGCGcGUAU----UCGuGCG--UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 121417 0.66 0.79951
Target:  5'- cGUGCUGCGCcuUGGGCcCGgGgGCCUg -3'
miRNA:   3'- -CGCGGCGCGu-AUUCGuGCgUgCGGAg -5'
5591 3' -57.8 NC_001806.1 + 119135 0.66 0.84204
Target:  5'- -aGCaCGCGCAU---CAUGCGCGUCUg -3'
miRNA:   3'- cgCG-GCGCGUAuucGUGCGUGCGGAg -5'
5591 3' -57.8 NC_001806.1 + 118526 1.1 0.001424
Target:  5'- cGCGCCGCGCAUAAGCACGCACGCCUCc -3'
miRNA:   3'- -CGCGGCGCGUAUUCGUGCGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 108948 0.67 0.760856
Target:  5'- gGCGCUGUGUGUAccGGCcuacgagccggacuaGCGCggggaagggggacagGCGCCUCu -3'
miRNA:   3'- -CGCGGCGCGUAU--UCG---------------UGCG---------------UGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 108536 0.66 0.84204
Target:  5'- gGCgGCC-CGCGUGcGGCugGCcGCGCC-Cg -3'
miRNA:   3'- -CG-CGGcGCGUAU-UCGugCG-UGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 106956 0.68 0.733941
Target:  5'- aCGCCGCccacGCAaacGGCGCGguCuGCCUCu -3'
miRNA:   3'- cGCGGCG----CGUau-UCGUGCguG-CGGAG- -5'
5591 3' -57.8 NC_001806.1 + 106877 0.67 0.790522
Target:  5'- gGCGCCGaGCA-GGGCcCGCGCcccCCUCu -3'
miRNA:   3'- -CGCGGCgCGUaUUCGuGCGUGc--GGAG- -5'
5591 3' -57.8 NC_001806.1 + 106549 0.78 0.217184
Target:  5'- aUGCCGCGCugguGCGCGCGCGCUa- -3'
miRNA:   3'- cGCGGCGCGuauuCGUGCGUGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.