miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 3' -57.8 NC_001806.1 + 152060 0.68 0.704348
Target:  5'- cCGCCGCccgccuuuuuuGCGc--GCGCGCGCGCC-Cg -3'
miRNA:   3'- cGCGGCG-----------CGUauuCGUGCGUGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 152033 0.79 0.182696
Target:  5'- cCGCCGCGC----GCGCGCACGCCg- -3'
miRNA:   3'- cGCGGCGCGuauuCGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 151142 0.74 0.370409
Target:  5'- cGC-CCGCGCGUcgcAGGCGCagGCGCGCCa- -3'
miRNA:   3'- -CGcGGCGCGUA---UUCGUG--CGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 150676 0.67 0.781393
Target:  5'- cCGCCGCGCu--GGCG-GC-CGCCg- -3'
miRNA:   3'- cGCGGCGCGuauUCGUgCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 150077 0.66 0.84204
Target:  5'- -gGCCGCGCGUcccaGGGgAgGCAgGCC-Ca -3'
miRNA:   3'- cgCGGCGCGUA----UUCgUgCGUgCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 148003 0.67 0.781393
Target:  5'- gGCGCCGCggcucgcgacugGCGgGAGC-CGC-CGCCg- -3'
miRNA:   3'- -CGCGGCG------------CGUaUUCGuGCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 147741 0.74 0.378529
Target:  5'- -gGCCGCGCGgGGGCGCGCGgGUCcCg -3'
miRNA:   3'- cgCGGCGCGUaUUCGUGCGUgCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 147561 0.67 0.781393
Target:  5'- -aGCCGCGCGccaccgucGCACGCGC-CCg- -3'
miRNA:   3'- cgCGGCGCGUauu-----CGUGCGUGcGGag -5'
5591 3' -57.8 NC_001806.1 + 147514 0.66 0.808348
Target:  5'- gGCGCCGCGgGaGGGCcCGUGCccacCCUCc -3'
miRNA:   3'- -CGCGGCGCgUaUUCGuGCGUGc---GGAG- -5'
5591 3' -57.8 NC_001806.1 + 145729 0.74 0.395122
Target:  5'- -gGCCGCGCG--GGUGCGCGUGCCUUu -3'
miRNA:   3'- cgCGGCGCGUauUCGUGCGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 144348 0.66 0.817028
Target:  5'- cGCcCCGCGCcgGuccauuaagGGCGCGCGUGCC-Cg -3'
miRNA:   3'- -CGcGGCGCGuaU---------UCGUGCGUGCGGaG- -5'
5591 3' -57.8 NC_001806.1 + 144209 0.7 0.571766
Target:  5'- cCGCCGCcgacaccGCA-GAGCcgGCGCGCGCaCUCa -3'
miRNA:   3'- cGCGGCG-------CGUaUUCG--UGCGUGCG-GAG- -5'
5591 3' -57.8 NC_001806.1 + 143637 0.66 0.817028
Target:  5'- aGCGCCcCGUcc-GGCGCGC-CGCCc- -3'
miRNA:   3'- -CGCGGcGCGuauUCGUGCGuGCGGag -5'
5591 3' -57.8 NC_001806.1 + 141642 0.67 0.781393
Target:  5'- -gGCgGCaCGUucGCGCGCACGCUa- -3'
miRNA:   3'- cgCGgCGcGUAuuCGUGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 140132 0.71 0.513419
Target:  5'- aCGCCagGCGCggcacacgggGUGGGCGC-CGCGCCUCc -3'
miRNA:   3'- cGCGG--CGCG----------UAUUCGUGcGUGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 139773 0.68 0.728077
Target:  5'- aCGCCGCGCAgguggugcauguuuuUGAGUACGgCAC-CCg- -3'
miRNA:   3'- cGCGGCGCGU---------------AUUCGUGC-GUGcGGag -5'
5591 3' -57.8 NC_001806.1 + 137968 0.79 0.192024
Target:  5'- aCGCUGCGCG--AGUACGCcCGCCUCu -3'
miRNA:   3'- cGCGGCGCGUauUCGUGCGuGCGGAG- -5'
5591 3' -57.8 NC_001806.1 + 137351 0.68 0.723168
Target:  5'- gGCGCCacGCGCAUugcGGCccaaaacAUGUACGCCa- -3'
miRNA:   3'- -CGCGG--CGCGUAu--UCG-------UGCGUGCGGag -5'
5591 3' -57.8 NC_001806.1 + 135591 0.67 0.753247
Target:  5'- -gGCCGCGCGcu-GCugGCGCuCCa- -3'
miRNA:   3'- cgCGGCGCGUauuCGugCGUGcGGag -5'
5591 3' -57.8 NC_001806.1 + 134872 0.67 0.743642
Target:  5'- gGCGgaGCaGCGUcuGCugGCuaauCGCCUCg -3'
miRNA:   3'- -CGCggCG-CGUAuuCGugCGu---GCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.