miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 5' -54.3 NC_001806.1 + 119288 0.67 0.915555
Target:  5'- -cACGCGgggGCGCcCG-CAGACCCGCc -3'
miRNA:   3'- uaUGCGUa--UGCGcGCgGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 114355 0.67 0.915555
Target:  5'- -gGCGCccgACGCggGCGCCAAcaCCGCGu -3'
miRNA:   3'- uaUGCGua-UGCG--CGCGGUUugGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 76845 0.67 0.915555
Target:  5'- cUACGCGacaggGCGCGCGCCu-GCagGCGc -3'
miRNA:   3'- uAUGCGUa----UGCGCGCGGuuUGggUGC- -5'
5591 5' -54.3 NC_001806.1 + 99946 0.67 0.914962
Target:  5'- ---gGCGggcCGCGCGCCGGGagucgacCCCGCGc -3'
miRNA:   3'- uaugCGUau-GCGCGCGGUUU-------GGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 24454 0.67 0.91377
Target:  5'- cGUGCGC--ACGCGCuucggcccggacacGCCGGuGCCCAUGu -3'
miRNA:   3'- -UAUGCGuaUGCGCG--------------CGGUU-UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 104402 0.67 0.909519
Target:  5'- cUGCGCGUucuCGCG-GCCAuaacAACCgACGu -3'
miRNA:   3'- uAUGCGUAu--GCGCgCGGU----UUGGgUGC- -5'
5591 5' -54.3 NC_001806.1 + 21485 0.67 0.909519
Target:  5'- -gACGCAgccgACGCcgccgGCGaCCGGGCCC-CGg -3'
miRNA:   3'- uaUGCGUa---UGCG-----CGC-GGUUUGGGuGC- -5'
5591 5' -54.3 NC_001806.1 + 49274 0.67 0.909519
Target:  5'- --cCGCc--CGUGCGCCGucgacgggaaGGCCCGCGa -3'
miRNA:   3'- uauGCGuauGCGCGCGGU----------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 4338 0.67 0.909519
Target:  5'- -cGCGCGggcccgGCG-GCGCuCGAugcgGCCCGCGg -3'
miRNA:   3'- uaUGCGUa-----UGCgCGCG-GUU----UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 82617 0.67 0.903239
Target:  5'- ---aGC--ACGCGCGUCAGcCCCGCa -3'
miRNA:   3'- uaugCGuaUGCGCGCGGUUuGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 29793 0.67 0.903239
Target:  5'- -cACGCAgagGCGC-CGCCGcGCCCcccgugACGg -3'
miRNA:   3'- uaUGCGUa--UGCGcGCGGUuUGGG------UGC- -5'
5591 5' -54.3 NC_001806.1 + 26964 0.67 0.903239
Target:  5'- --cCGCcUG-GCGCGCCGcggcucgugGGCCCGCGa -3'
miRNA:   3'- uauGCGuAUgCGCGCGGU---------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 147744 0.67 0.903239
Target:  5'- -cGCGCGgggGCGCGCGggucCCGAcgcGgCCGCGg -3'
miRNA:   3'- uaUGCGUa--UGCGCGC----GGUU---UgGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 27609 0.67 0.903239
Target:  5'- -cGCGCAUugGCcCGCgGgucgcucaaugAACCCGCa -3'
miRNA:   3'- uaUGCGUAugCGcGCGgU-----------UUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 99691 0.67 0.896717
Target:  5'- -gGgGCAUGgGa-CGCCGGACCCugGg -3'
miRNA:   3'- uaUgCGUAUgCgcGCGGUUUGGGugC- -5'
5591 5' -54.3 NC_001806.1 + 9776 0.68 0.890643
Target:  5'- -gGCGCGUggggaggggccccgACGUGCgggugggugggcucgGCCAAAUCCGCGc -3'
miRNA:   3'- uaUGCGUA--------------UGCGCG---------------CGGUUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 128519 0.68 0.889956
Target:  5'- cGUGCgGCAUggccAUGCGgGCCGcagccagacggcGGCCCGCGu -3'
miRNA:   3'- -UAUG-CGUA----UGCGCgCGGU------------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 95660 0.68 0.889956
Target:  5'- -gGCGC--GCGCGCGCUucugcGCCCugACGg -3'
miRNA:   3'- uaUGCGuaUGCGCGCGGuu---UGGG--UGC- -5'
5591 5' -54.3 NC_001806.1 + 132268 0.68 0.889956
Target:  5'- -cGCGCuauuUGCGCGCGaauaCCAGACUCuuGCGu -3'
miRNA:   3'- uaUGCGu---AUGCGCGC----GGUUUGGG--UGC- -5'
5591 5' -54.3 NC_001806.1 + 13622 0.68 0.889267
Target:  5'- gGUAgGCccgccuggaugugGUACaCGCGCCGGACCCcCGg -3'
miRNA:   3'- -UAUgCG-------------UAUGcGCGCGGUUUGGGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.