miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 5' -54.3 NC_001806.1 + 84137 0.66 0.932179
Target:  5'- -aGCGCAUcgcggggcacgcACGCGCGaCguGGCuCCGCGc -3'
miRNA:   3'- uaUGCGUA------------UGCGCGC-GguUUG-GGUGC- -5'
5591 5' -54.3 NC_001806.1 + 59367 0.66 0.932179
Target:  5'- -gGCGCAUGCaGgGUGCUGcaccAAUCCGCGu -3'
miRNA:   3'- uaUGCGUAUG-CgCGCGGU----UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 3231 0.66 0.932179
Target:  5'- -gGCGCAUGagcaccaGCGCGUCGcgcacgaaccgcAGCUCGCGc -3'
miRNA:   3'- uaUGCGUAUg------CGCGCGGU------------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 51248 0.66 0.932179
Target:  5'- -cGgGCGUcaccAUGCaGCGCCGGACgCGCGg -3'
miRNA:   3'- uaUgCGUA----UGCG-CGCGGUUUGgGUGC- -5'
5591 5' -54.3 NC_001806.1 + 22959 0.66 0.932179
Target:  5'- -cACGCcgACGCGCcCC--GCCUGCGc -3'
miRNA:   3'- uaUGCGuaUGCGCGcGGuuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 92095 0.66 0.932179
Target:  5'- cGUACGCGUGCGggcCGUGCCc--CCUGCu -3'
miRNA:   3'- -UAUGCGUAUGC---GCGCGGuuuGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 24675 0.66 0.932179
Target:  5'- -gGCGCgaggcgGUGCGCGCcgGCCcGGCCCGg- -3'
miRNA:   3'- uaUGCG------UAUGCGCG--CGGuUUGGGUgc -5'
5591 5' -54.3 NC_001806.1 + 50590 0.66 0.932179
Target:  5'- -gGCGCugcgguGUACGCGCuGCaCAcGGCCCugGc -3'
miRNA:   3'- uaUGCG------UAUGCGCG-CG-GU-UUGGGugC- -5'
5591 5' -54.3 NC_001806.1 + 74758 0.66 0.932179
Target:  5'- -aGCGCGggaGCGgGCgAAggugGCCCGCGa -3'
miRNA:   3'- uaUGCGUaugCGCgCGgUU----UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 73285 0.67 0.926885
Target:  5'- --cCGCGUGCucCGcCGCCcuGGCCCGCGa -3'
miRNA:   3'- uauGCGUAUGc-GC-GCGGu-UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 24571 0.67 0.926885
Target:  5'- -gGCGCccg-GCGCGCCGGACUUcuGCGa -3'
miRNA:   3'- uaUGCGuaugCGCGCGGUUUGGG--UGC- -5'
5591 5' -54.3 NC_001806.1 + 50411 0.67 0.926885
Target:  5'- --uCGUggGgGCGCGCCugcACCCGCa -3'
miRNA:   3'- uauGCGuaUgCGCGCGGuu-UGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 1940 0.67 0.926885
Target:  5'- -gGCGCAgguccCGCGcCGCCGgccAGCgCACGg -3'
miRNA:   3'- uaUGCGUau---GCGC-GCGGU---UUGgGUGC- -5'
5591 5' -54.3 NC_001806.1 + 22378 0.67 0.926885
Target:  5'- -gGCaGCGUgGCGCGgGCCGugcCCCACc -3'
miRNA:   3'- uaUG-CGUA-UGCGCgCGGUuu-GGGUGc -5'
5591 5' -54.3 NC_001806.1 + 74648 0.67 0.926885
Target:  5'- cUGCgGCAgGCGCGgGCCAuggAugCCGCc -3'
miRNA:   3'- uAUG-CGUaUGCGCgCGGU---UugGGUGc -5'
5591 5' -54.3 NC_001806.1 + 91618 0.67 0.921344
Target:  5'- cUAUGCAccuucgACaCGCGCCAcGCCUGCGu -3'
miRNA:   3'- uAUGCGUa-----UGcGCGCGGUuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 49634 0.67 0.921344
Target:  5'- --cUGgAgggACGCGUGCCGGGCCCGg- -3'
miRNA:   3'- uauGCgUa--UGCGCGCGGUUUGGGUgc -5'
5591 5' -54.3 NC_001806.1 + 119288 0.67 0.915555
Target:  5'- -cACGCGgggGCGCcCG-CAGACCCGCc -3'
miRNA:   3'- uaUGCGUa--UGCGcGCgGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 30191 0.67 0.915555
Target:  5'- --cCGCGUcCGCG-GCCGcgucggGACCCGCGc -3'
miRNA:   3'- uauGCGUAuGCGCgCGGU------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 76845 0.67 0.915555
Target:  5'- cUACGCGacaggGCGCGCGCCu-GCagGCGc -3'
miRNA:   3'- uAUGCGUa----UGCGCGCGGuuUGggUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.