miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 5' -54.3 NC_001806.1 + 35582 0.72 0.651326
Target:  5'- -aACGaCGUGCGCaGCGCCGgaguuuuGGCCCugGc -3'
miRNA:   3'- uaUGC-GUAUGCG-CGCGGU-------UUGGGugC- -5'
5591 5' -54.3 NC_001806.1 + 81708 0.72 0.668987
Target:  5'- gGUGCGUccuuuuuuauagGCGCGCGCCAGcaccaaccACCCACc -3'
miRNA:   3'- -UAUGCGua----------UGCGCGCGGUU--------UGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 145734 0.72 0.673131
Target:  5'- -cGCGgGUGCGCGUGCCuuugcacaccAAcCCCACGu -3'
miRNA:   3'- uaUGCgUAUGCGCGCGG----------UUuGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 1335 0.72 0.683466
Target:  5'- --cCGCGgggGCGUG-GCCAAGCCCGCc -3'
miRNA:   3'- uauGCGUa--UGCGCgCGGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 22759 0.72 0.683466
Target:  5'- -gACGCcgACGaCGaCGCCGGGCgCCGCGc -3'
miRNA:   3'- uaUGCGuaUGC-GC-GCGGUUUG-GGUGC- -5'
5591 5' -54.3 NC_001806.1 + 79702 0.72 0.683466
Target:  5'- -cACGCucccugGCGCGCGCC--ACCCAgGc -3'
miRNA:   3'- uaUGCGua----UGCGCGCGGuuUGGGUgC- -5'
5591 5' -54.3 NC_001806.1 + 91662 0.72 0.703995
Target:  5'- cAUGCGCcuccggGCGCGCcauccaaaguucGCCAGcgccGCCCGCGg -3'
miRNA:   3'- -UAUGCGua----UGCGCG------------CGGUU----UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 24288 0.72 0.703995
Target:  5'- aGUGCGcCGUGCGCuggccggcgGCGCgGGACCUGCGc -3'
miRNA:   3'- -UAUGC-GUAUGCG---------CGCGgUUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 74702 0.72 0.703995
Target:  5'- gAUGCGCGUGCccguuugcgggaGCGCGCgCGcuCCCugGa -3'
miRNA:   3'- -UAUGCGUAUG------------CGCGCG-GUuuGGGugC- -5'
5591 5' -54.3 NC_001806.1 + 47245 0.72 0.703995
Target:  5'- uGUACGCAacgGgGCGCcugaGCCAGGCCCAg- -3'
miRNA:   3'- -UAUGCGUa--UgCGCG----CGGUUUGGGUgc -5'
5591 5' -54.3 NC_001806.1 + 41823 0.72 0.703995
Target:  5'- aAUACGCGgggGCGgGCGUCAgGGCCC-CGg -3'
miRNA:   3'- -UAUGCGUa--UGCgCGCGGU-UUGGGuGC- -5'
5591 5' -54.3 NC_001806.1 + 121285 0.72 0.703995
Target:  5'- -cACGCAUACGgGCGgCCAccCCCcCGg -3'
miRNA:   3'- uaUGCGUAUGCgCGC-GGUuuGGGuGC- -5'
5591 5' -54.3 NC_001806.1 + 30314 0.71 0.71417
Target:  5'- --cCGCGgACGCGCGCCGuguGCCC-Ca -3'
miRNA:   3'- uauGCGUaUGCGCGCGGUu--UGGGuGc -5'
5591 5' -54.3 NC_001806.1 + 1611 0.71 0.71417
Target:  5'- --cCGCAgcgGCGCGC-CCAGGCCCcaGCGc -3'
miRNA:   3'- uauGCGUa--UGCGCGcGGUUUGGG--UGC- -5'
5591 5' -54.3 NC_001806.1 + 3293 0.71 0.71822
Target:  5'- -gGCGCGUcgGCGUGCGgCGgcggcggggaagcggGGCCCGCGg -3'
miRNA:   3'- uaUGCGUA--UGCGCGCgGU---------------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 121413 0.71 0.724272
Target:  5'- -gGCGCGUGC-UGCGCCuugGGCCCGgGg -3'
miRNA:   3'- uaUGCGUAUGcGCGCGGu--UUGGGUgC- -5'
5591 5' -54.3 NC_001806.1 + 43171 0.71 0.734292
Target:  5'- uUGCGUccGCGCGCccaaggGCCAGuacccGCCCGCGa -3'
miRNA:   3'- uAUGCGuaUGCGCG------CGGUU-----UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 48599 0.71 0.734292
Target:  5'- gGUGgGUAggGgGCGCGaCCGGACCCGCa -3'
miRNA:   3'- -UAUgCGUa-UgCGCGC-GGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 113139 0.71 0.734292
Target:  5'- -aACGCcuggGgGCaGCGCCuGGCCCACGg -3'
miRNA:   3'- uaUGCGua--UgCG-CGCGGuUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 32933 0.71 0.74422
Target:  5'- -cACGCAUGCGcCGgGCCGuuguggGGCCC-CGg -3'
miRNA:   3'- uaUGCGUAUGC-GCgCGGU------UUGGGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.