miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 5' -54.3 NC_001806.1 + 118561 1.06 0.005906
Target:  5'- aAUACGCAUACGCGCGCCAAACCCACGc -3'
miRNA:   3'- -UAUGCGUAUGCGCGCGGUUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 41732 0.78 0.363447
Target:  5'- -gGCGCAaACGCGgGCC--ACCCGCGg -3'
miRNA:   3'- uaUGCGUaUGCGCgCGGuuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 21901 0.76 0.432535
Target:  5'- --cCGCAUcgaGCGC-CGCCGGGCCCGCGc -3'
miRNA:   3'- uauGCGUA---UGCGcGCGGUUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 366 0.76 0.460348
Target:  5'- uUGCGCGcGCGCGCGCCcgcgggGGGCCCGgGc -3'
miRNA:   3'- uAUGCGUaUGCGCGCGG------UUUGGGUgC- -5'
5591 5' -54.3 NC_001806.1 + 152076 0.76 0.460348
Target:  5'- uUGCGCGcGCGCGCGCCcgcgggGGGCCCGgGc -3'
miRNA:   3'- uAUGCGUaUGCGCGCGG------UUUGGGUgC- -5'
5591 5' -54.3 NC_001806.1 + 139491 0.76 0.479407
Target:  5'- -aGCGCGUACGUG-GCCAuguCCCGCa -3'
miRNA:   3'- uaUGCGUAUGCGCgCGGUuu-GGGUGc -5'
5591 5' -54.3 NC_001806.1 + 74263 0.75 0.48908
Target:  5'- -cGCGCA-GCGCGcCGCCAuuCCCGCc -3'
miRNA:   3'- uaUGCGUaUGCGC-GCGGUuuGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 124222 0.75 0.498844
Target:  5'- aGUGCGUucUACGCGCcgGCCGcACCCACa -3'
miRNA:   3'- -UAUGCGu-AUGCGCG--CGGUuUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 66510 0.75 0.508694
Target:  5'- -aACGCGggguuuggggaUugGCG-GCCAGGCCCGCGa -3'
miRNA:   3'- uaUGCGU-----------AugCGCgCGGUUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 120083 0.75 0.508694
Target:  5'- -cGCGCAUACaucugGCGUGCCuccGGGCCCugGg -3'
miRNA:   3'- uaUGCGUAUG-----CGCGCGG---UUUGGGugC- -5'
5591 5' -54.3 NC_001806.1 + 131955 0.75 0.532653
Target:  5'- uGUACGCGUGCGUccuggcggcccuggaGCGCCAGACCgGg- -3'
miRNA:   3'- -UAUGCGUAUGCG---------------CGCGGUUUGGgUgc -5'
5591 5' -54.3 NC_001806.1 + 151157 0.74 0.538708
Target:  5'- -gGCGCAg--GCGCGCCAGguGCuCCGCGg -3'
miRNA:   3'- uaUGCGUaugCGCGCGGUU--UG-GGUGC- -5'
5591 5' -54.3 NC_001806.1 + 23717 0.74 0.569303
Target:  5'- -cGCGCG---GUGCGCCGGGCCCGCc -3'
miRNA:   3'- uaUGCGUaugCGCGCGGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 1874 0.74 0.569303
Target:  5'- cGUGCGCGgccuccACGCGCGCgaAGACCCcCGg -3'
miRNA:   3'- -UAUGCGUa-----UGCGCGCGg-UUUGGGuGC- -5'
5591 5' -54.3 NC_001806.1 + 24372 0.74 0.569303
Target:  5'- -cGCGCGUggaggccgcgcACGCGCGCCuguACCC-CGa -3'
miRNA:   3'- uaUGCGUA-----------UGCGCGCGGuu-UGGGuGC- -5'
5591 5' -54.3 NC_001806.1 + 58330 0.74 0.579602
Target:  5'- cUugGCGUugGCGgcCGCCuGGCCCGCc -3'
miRNA:   3'- uAugCGUAugCGC--GCGGuUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 77387 0.74 0.58994
Target:  5'- -gGCGCGgGCGCgGCgGCCGcGCCCGCGc -3'
miRNA:   3'- uaUGCGUaUGCG-CG-CGGUuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 64146 0.73 0.631534
Target:  5'- -gGCGCAUGC-CGCGCguGGCCCGg- -3'
miRNA:   3'- uaUGCGUAUGcGCGCGguUUGGGUgc -5'
5591 5' -54.3 NC_001806.1 + 24614 0.73 0.631534
Target:  5'- -cACGCcgccUGCGCGCGCUggGgCCugGg -3'
miRNA:   3'- uaUGCGu---AUGCGCGCGGuuUgGGugC- -5'
5591 5' -54.3 NC_001806.1 + 76508 0.73 0.641954
Target:  5'- gGUGCGCGccaaacaGCaGCGCGCCGAAgCCACc -3'
miRNA:   3'- -UAUGCGUa------UG-CGCGCGGUUUgGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.