Results 1 - 20 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5591 | 5' | -54.3 | NC_001806.1 | + | 118561 | 1.06 | 0.005906 |
Target: 5'- aAUACGCAUACGCGCGCCAAACCCACGc -3' miRNA: 3'- -UAUGCGUAUGCGCGCGGUUUGGGUGC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 41732 | 0.78 | 0.363447 |
Target: 5'- -gGCGCAaACGCGgGCC--ACCCGCGg -3' miRNA: 3'- uaUGCGUaUGCGCgCGGuuUGGGUGC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 21901 | 0.76 | 0.432535 |
Target: 5'- --cCGCAUcgaGCGC-CGCCGGGCCCGCGc -3' miRNA: 3'- uauGCGUA---UGCGcGCGGUUUGGGUGC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 366 | 0.76 | 0.460348 |
Target: 5'- uUGCGCGcGCGCGCGCCcgcgggGGGCCCGgGc -3' miRNA: 3'- uAUGCGUaUGCGCGCGG------UUUGGGUgC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 152076 | 0.76 | 0.460348 |
Target: 5'- uUGCGCGcGCGCGCGCCcgcgggGGGCCCGgGc -3' miRNA: 3'- uAUGCGUaUGCGCGCGG------UUUGGGUgC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 139491 | 0.76 | 0.479407 |
Target: 5'- -aGCGCGUACGUG-GCCAuguCCCGCa -3' miRNA: 3'- uaUGCGUAUGCGCgCGGUuu-GGGUGc -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 74263 | 0.75 | 0.48908 |
Target: 5'- -cGCGCA-GCGCGcCGCCAuuCCCGCc -3' miRNA: 3'- uaUGCGUaUGCGC-GCGGUuuGGGUGc -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 124222 | 0.75 | 0.498844 |
Target: 5'- aGUGCGUucUACGCGCcgGCCGcACCCACa -3' miRNA: 3'- -UAUGCGu-AUGCGCG--CGGUuUGGGUGc -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 66510 | 0.75 | 0.508694 |
Target: 5'- -aACGCGggguuuggggaUugGCG-GCCAGGCCCGCGa -3' miRNA: 3'- uaUGCGU-----------AugCGCgCGGUUUGGGUGC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 120083 | 0.75 | 0.508694 |
Target: 5'- -cGCGCAUACaucugGCGUGCCuccGGGCCCugGg -3' miRNA: 3'- uaUGCGUAUG-----CGCGCGG---UUUGGGugC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 131955 | 0.75 | 0.532653 |
Target: 5'- uGUACGCGUGCGUccuggcggcccuggaGCGCCAGACCgGg- -3' miRNA: 3'- -UAUGCGUAUGCG---------------CGCGGUUUGGgUgc -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 151157 | 0.74 | 0.538708 |
Target: 5'- -gGCGCAg--GCGCGCCAGguGCuCCGCGg -3' miRNA: 3'- uaUGCGUaugCGCGCGGUU--UG-GGUGC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 23717 | 0.74 | 0.569303 |
Target: 5'- -cGCGCG---GUGCGCCGGGCCCGCc -3' miRNA: 3'- uaUGCGUaugCGCGCGGUUUGGGUGc -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 1874 | 0.74 | 0.569303 |
Target: 5'- cGUGCGCGgccuccACGCGCGCgaAGACCCcCGg -3' miRNA: 3'- -UAUGCGUa-----UGCGCGCGg-UUUGGGuGC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 24372 | 0.74 | 0.569303 |
Target: 5'- -cGCGCGUggaggccgcgcACGCGCGCCuguACCC-CGa -3' miRNA: 3'- uaUGCGUA-----------UGCGCGCGGuu-UGGGuGC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 58330 | 0.74 | 0.579602 |
Target: 5'- cUugGCGUugGCGgcCGCCuGGCCCGCc -3' miRNA: 3'- uAugCGUAugCGC--GCGGuUUGGGUGc -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 77387 | 0.74 | 0.58994 |
Target: 5'- -gGCGCGgGCGCgGCgGCCGcGCCCGCGc -3' miRNA: 3'- uaUGCGUaUGCG-CG-CGGUuUGGGUGC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 64146 | 0.73 | 0.631534 |
Target: 5'- -gGCGCAUGC-CGCGCguGGCCCGg- -3' miRNA: 3'- uaUGCGUAUGcGCGCGguUUGGGUgc -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 24614 | 0.73 | 0.631534 |
Target: 5'- -cACGCcgccUGCGCGCGCUggGgCCugGg -3' miRNA: 3'- uaUGCGu---AUGCGCGCGGuuUgGGugC- -5' |
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5591 | 5' | -54.3 | NC_001806.1 | + | 76508 | 0.73 | 0.641954 |
Target: 5'- gGUGCGCGccaaacaGCaGCGCGCCGAAgCCACc -3' miRNA: 3'- -UAUGCGUa------UG-CGCGCGGUUUgGGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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