miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 5' -54.3 NC_001806.1 + 366 0.76 0.460348
Target:  5'- uUGCGCGcGCGCGCGCCcgcgggGGGCCCGgGc -3'
miRNA:   3'- uAUGCGUaUGCGCGCGG------UUUGGGUgC- -5'
5591 5' -54.3 NC_001806.1 + 1335 0.72 0.683466
Target:  5'- --cCGCGgggGCGUG-GCCAAGCCCGCc -3'
miRNA:   3'- uauGCGUa--UGCGCgCGGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 1611 0.71 0.71417
Target:  5'- --cCGCAgcgGCGCGC-CCAGGCCCcaGCGc -3'
miRNA:   3'- uauGCGUa--UGCGCGcGGUUUGGG--UGC- -5'
5591 5' -54.3 NC_001806.1 + 1669 0.68 0.88296
Target:  5'- --uCGCAgaaguccgGCGCGCCGGGCgCCAUGg -3'
miRNA:   3'- uauGCGUaug-----CGCGCGGUUUG-GGUGC- -5'
5591 5' -54.3 NC_001806.1 + 1799 0.68 0.88296
Target:  5'- -aGCGCGUGCGCaCGCgGuAGCgCACGu -3'
miRNA:   3'- uaUGCGUAUGCGcGCGgU-UUGgGUGC- -5'
5591 5' -54.3 NC_001806.1 + 1874 0.74 0.569303
Target:  5'- cGUGCGCGgccuccACGCGCGCgaAGACCCcCGg -3'
miRNA:   3'- -UAUGCGUa-----UGCGCGCGg-UUUGGGuGC- -5'
5591 5' -54.3 NC_001806.1 + 1940 0.67 0.926885
Target:  5'- -gGCGCAgguccCGCGcCGCCGgccAGCgCACGg -3'
miRNA:   3'- uaUGCGUau---GCGC-GCGGU---UUGgGUGC- -5'
5591 5' -54.3 NC_001806.1 + 2537 0.71 0.754046
Target:  5'- -gGCGCAc-CGCGCGgCGAucgaggccaggGCCCGCGg -3'
miRNA:   3'- uaUGCGUauGCGCGCgGUU-----------UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 3231 0.66 0.932179
Target:  5'- -gGCGCAUGagcaccaGCGCGUCGcgcacgaaccgcAGCUCGCGc -3'
miRNA:   3'- uaUGCGUAUg------CGCGCGGU------------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 3293 0.71 0.71822
Target:  5'- -gGCGCGUcgGCGUGCGgCGgcggcggggaagcggGGCCCGCGg -3'
miRNA:   3'- uaUGCGUA--UGCGCGCgGU---------------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 3807 0.7 0.763762
Target:  5'- --cCGCc-GCGUGCGCCAGGCCC-Ca -3'
miRNA:   3'- uauGCGuaUGCGCGCGGUUUGGGuGc -5'
5591 5' -54.3 NC_001806.1 + 4338 0.67 0.909519
Target:  5'- -cGCGCGggcccgGCG-GCGCuCGAugcgGCCCGCGg -3'
miRNA:   3'- uaUGCGUa-----UGCgCGCG-GUU----UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 7764 0.66 0.946579
Target:  5'- uGUGCGCugcaaACGUGCGCgAuccCCCGCc -3'
miRNA:   3'- -UAUGCGua---UGCGCGCGgUuu-GGGUGc -5'
5591 5' -54.3 NC_001806.1 + 9776 0.68 0.890643
Target:  5'- -gGCGCGUggggaggggccccgACGUGCgggugggugggcucgGCCAAAUCCGCGc -3'
miRNA:   3'- uaUGCGUA--------------UGCGCG---------------CGGUUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 10737 0.69 0.844627
Target:  5'- -aGCGCGcAUGCaCGCCGcAUCCACGa -3'
miRNA:   3'- uaUGCGUaUGCGcGCGGUuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 11862 0.7 0.801315
Target:  5'- gGUugGUAUACGCuCGCCGGGgCCAg- -3'
miRNA:   3'- -UAugCGUAUGCGcGCGGUUUgGGUgc -5'
5591 5' -54.3 NC_001806.1 + 11995 0.71 0.74422
Target:  5'- -gGCGU-UugGCGCGUCAccGACCCAUa -3'
miRNA:   3'- uaUGCGuAugCGCGCGGU--UUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 13622 0.68 0.889267
Target:  5'- gGUAgGCccgccuggaugugGUACaCGCGCCGGACCCcCGg -3'
miRNA:   3'- -UAUgCG-------------UAUGcGCGCGGUUUGGGuGC- -5'
5591 5' -54.3 NC_001806.1 + 18636 0.7 0.782819
Target:  5'- -gACGCGaGCGUGUGguCCGAACCgGCGg -3'
miRNA:   3'- uaUGCGUaUGCGCGC--GGUUUGGgUGC- -5'
5591 5' -54.3 NC_001806.1 + 20128 0.7 0.792141
Target:  5'- -cGCGCcgggccuuUAUGUGCGCCGgagaGACCCGCc -3'
miRNA:   3'- uaUGCGu-------AUGCGCGCGGU----UUGGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.