miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 5' -54.3 NC_001806.1 + 152076 0.76 0.460348
Target:  5'- uUGCGCGcGCGCGCGCCcgcgggGGGCCCGgGc -3'
miRNA:   3'- uAUGCGUaUGCGCGCGG------UUUGGGUgC- -5'
5591 5' -54.3 NC_001806.1 + 151157 0.74 0.538708
Target:  5'- -gGCGCAg--GCGCGCCAGguGCuCCGCGg -3'
miRNA:   3'- uaUGCGUaugCGCGCGGUU--UG-GGUGC- -5'
5591 5' -54.3 NC_001806.1 + 147744 0.67 0.903239
Target:  5'- -cGCGCGgggGCGCGCGggucCCGAcgcGgCCGCGg -3'
miRNA:   3'- uaUGCGUa--UGCGCGC----GGUU---UgGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 147019 0.67 0.915555
Target:  5'- gAUGgGCAgguaGCGCGUgAGgccGCCCGCGg -3'
miRNA:   3'- -UAUgCGUaug-CGCGCGgUU---UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 145734 0.72 0.673131
Target:  5'- -cGCGgGUGCGCGUGCCuuugcacaccAAcCCCACGu -3'
miRNA:   3'- uaUGCgUAUGCGCGCGG----------UUuGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 144353 0.66 0.943876
Target:  5'- -cGCGCcgguccauuaaggGCGCGCGU---GCCCGCGa -3'
miRNA:   3'- uaUGCGua-----------UGCGCGCGguuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 144280 0.69 0.810329
Target:  5'- uUAUGUGgcCGCGgGCCAGcagacgGCCCGCGa -3'
miRNA:   3'- uAUGCGUauGCGCgCGGUU------UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 141425 0.69 0.847889
Target:  5'- -gGgGCG-GCGCGCgGCCAAccggcggauaacuccGCCCACGa -3'
miRNA:   3'- uaUgCGUaUGCGCG-CGGUU---------------UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 140025 0.68 0.88296
Target:  5'- -cGCGCG-GCGaaaGCGCCcgGAGCgCCACGg -3'
miRNA:   3'- uaUGCGUaUGCg--CGCGG--UUUG-GGUGC- -5'
5591 5' -54.3 NC_001806.1 + 139491 0.76 0.479407
Target:  5'- -aGCGCGUACGUG-GCCAuguCCCGCa -3'
miRNA:   3'- uaUGCGUAUGCGCgCGGUuu-GGGUGc -5'
5591 5' -54.3 NC_001806.1 + 138196 0.7 0.801315
Target:  5'- -aGCGCGUACaUG-GCCAAGCuCCACGc -3'
miRNA:   3'- uaUGCGUAUGcGCgCGGUUUG-GGUGC- -5'
5591 5' -54.3 NC_001806.1 + 135647 0.68 0.882247
Target:  5'- -cGCGCuccugcaAUugG-GuCGCCAGGCCCGCGu -3'
miRNA:   3'- uaUGCG-------UAugCgC-GCGGUUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 135620 0.7 0.782819
Target:  5'- --cCGCuguUGCGCGCCGgAGCUCGCGg -3'
miRNA:   3'- uauGCGuauGCGCGCGGU-UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 134451 0.69 0.810329
Target:  5'- -aACGCGUucgaauggggACGUGCGgCG-ACCCGCGa -3'
miRNA:   3'- uaUGCGUA----------UGCGCGCgGUuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 132652 0.68 0.87352
Target:  5'- gGUGCGCGgggccgcggccgcuUACGcCGCGCUccugggggccuGGCCCGCGg -3'
miRNA:   3'- -UAUGCGU--------------AUGC-GCGCGGu----------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 132268 0.68 0.889956
Target:  5'- -cGCGCuauuUGCGCGCGaauaCCAGACUCuuGCGu -3'
miRNA:   3'- uaUGCGu---AUGCGCGC----GGUUUGGG--UGC- -5'
5591 5' -54.3 NC_001806.1 + 132184 0.66 0.946579
Target:  5'- ---gGCGUGgGCGCGCCuggcGGCCauuCGCGa -3'
miRNA:   3'- uaugCGUAUgCGCGCGGu---UUGG---GUGC- -5'
5591 5' -54.3 NC_001806.1 + 131955 0.75 0.532653
Target:  5'- uGUACGCGUGCGUccuggcggcccuggaGCGCCAGACCgGg- -3'
miRNA:   3'- -UAUGCGUAUGCG---------------CGCGGUUUGGgUgc -5'
5591 5' -54.3 NC_001806.1 + 131258 0.68 0.863703
Target:  5'- --uUGCGgGCGCGCGCUucaagcuacgcguGCCCGCGu -3'
miRNA:   3'- uauGCGUaUGCGCGCGGuu-----------UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 131179 0.66 0.950472
Target:  5'- -gACGCccACcacaucgaccacaGCGCcuGCCGGACCCACa -3'
miRNA:   3'- uaUGCGuaUG-------------CGCG--CGGUUUGGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.