miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 5' -54.3 NC_001806.1 + 7764 0.66 0.946579
Target:  5'- uGUGCGCugcaaACGUGCGCgAuccCCCGCc -3'
miRNA:   3'- -UAUGCGua---UGCGCGCGgUuu-GGGUGc -5'
5591 5' -54.3 NC_001806.1 + 3231 0.66 0.932179
Target:  5'- -gGCGCAUGagcaccaGCGCGUCGcgcacgaaccgcAGCUCGCGc -3'
miRNA:   3'- uaUGCGUAUg------CGCGCGGU------------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 77341 0.66 0.937225
Target:  5'- --cCGCAUgggcuuauauaGCGCGUacGCCAAGgCCACa -3'
miRNA:   3'- uauGCGUA-----------UGCGCG--CGGUUUgGGUGc -5'
5591 5' -54.3 NC_001806.1 + 92095 0.66 0.932179
Target:  5'- cGUACGCGUGCGggcCGUGCCc--CCUGCu -3'
miRNA:   3'- -UAUGCGUAUGC---GCGCGGuuuGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 22959 0.66 0.932179
Target:  5'- -cACGCcgACGCGCcCC--GCCUGCGc -3'
miRNA:   3'- uaUGCGuaUGCGCGcGGuuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 84137 0.66 0.932179
Target:  5'- -aGCGCAUcgcggggcacgcACGCGCGaCguGGCuCCGCGc -3'
miRNA:   3'- uaUGCGUA------------UGCGCGC-GguUUG-GGUGC- -5'
5591 5' -54.3 NC_001806.1 + 79677 0.66 0.950892
Target:  5'- --uCGC--GCGCGCGCCGAcaCCGCc -3'
miRNA:   3'- uauGCGuaUGCGCGCGGUUugGGUGc -5'
5591 5' -54.3 NC_001806.1 + 24675 0.66 0.932179
Target:  5'- -gGCGCgaggcgGUGCGCGCcgGCCcGGCCCGg- -3'
miRNA:   3'- uaUGCG------UAUGCGCG--CGGuUUGGGUgc -5'
5591 5' -54.3 NC_001806.1 + 107016 0.66 0.946135
Target:  5'- -cGCGC--GCGCuuGCCGGguuggccGCCCGCGg -3'
miRNA:   3'- uaUGCGuaUGCGcgCGGUU-------UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 59367 0.66 0.932179
Target:  5'- -gGCGCAUGCaGgGUGCUGcaccAAUCCGCGu -3'
miRNA:   3'- uaUGCGUAUG-CgCGCGGU----UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 57871 0.66 0.937225
Target:  5'- --cCGUGUcCGCGCGCCAucCUCGCc -3'
miRNA:   3'- uauGCGUAuGCGCGCGGUuuGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 46117 0.66 0.937225
Target:  5'- cUGCGCGgGCGCcucCGCC--ACCCGCu -3'
miRNA:   3'- uAUGCGUaUGCGc--GCGGuuUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 144353 0.66 0.943876
Target:  5'- -cGCGCcgguccauuaaggGCGCGCGU---GCCCGCGa -3'
miRNA:   3'- uaUGCGua-----------UGCGCGCGguuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 51297 0.66 0.942025
Target:  5'- -gGCGCGgugccugACGCcUGCCAaccuGAUCCGCGg -3'
miRNA:   3'- uaUGCGUa------UGCGcGCGGU----UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 113837 0.66 0.946579
Target:  5'- -gACGCccugAUGCgGCGCGC--GGCCCugGa -3'
miRNA:   3'- uaUGCG----UAUG-CGCGCGguUUGGGugC- -5'
5591 5' -54.3 NC_001806.1 + 51122 0.66 0.941085
Target:  5'- -gGCGCAcgugucggggagGCGCGCGaCCGggcugggaGGCCCGCc -3'
miRNA:   3'- uaUGCGUa-----------UGCGCGC-GGU--------UUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 74758 0.66 0.932179
Target:  5'- -aGCGCGggaGCGgGCgAAggugGCCCGCGa -3'
miRNA:   3'- uaUGCGUaugCGCgCGgUU----UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 51248 0.66 0.932179
Target:  5'- -cGgGCGUcaccAUGCaGCGCCGGACgCGCGg -3'
miRNA:   3'- uaUgCGUA----UGCG-CGCGGUUUGgGUGC- -5'
5591 5' -54.3 NC_001806.1 + 99831 0.66 0.942025
Target:  5'- -gGCGUGUACauuccauaggggGCGCugguCCGAGCCCGCa -3'
miRNA:   3'- uaUGCGUAUG------------CGCGc---GGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 66271 0.66 0.936732
Target:  5'- -cGCGCAUGCccgccacucgccgGgGCGCCAca-CCACGc -3'
miRNA:   3'- uaUGCGUAUG-------------CgCGCGGUuugGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.