miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 5' -54.3 NC_001806.1 + 144353 0.66 0.943876
Target:  5'- -cGCGCcgguccauuaaggGCGCGCGU---GCCCGCGa -3'
miRNA:   3'- uaUGCGua-----------UGCGCGCGguuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 53854 0.66 0.946579
Target:  5'- -gACGCGUGCGacgGCGgCCAgcuguuuggcAGCCgCGCGg -3'
miRNA:   3'- uaUGCGUAUGCg--CGC-GGU----------UUGG-GUGC- -5'
5591 5' -54.3 NC_001806.1 + 108542 0.66 0.946579
Target:  5'- --cCGCGUGCG-GCugGCCGcGCCCGCc -3'
miRNA:   3'- uauGCGUAUGCgCG--CGGUuUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 66271 0.66 0.936732
Target:  5'- -cGCGCAUGCccgccacucgccgGgGCGCCAca-CCACGc -3'
miRNA:   3'- uaUGCGUAUG-------------CgCGCGGUuugGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 54095 0.66 0.946579
Target:  5'- --cCGCG-GCGgGgaGCCGAGCCCGCa -3'
miRNA:   3'- uauGCGUaUGCgCg-CGGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 131179 0.66 0.950472
Target:  5'- -gACGCccACcacaucgaccacaGCGCcuGCCGGACCCACa -3'
miRNA:   3'- uaUGCGuaUG-------------CGCG--CGGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 99831 0.66 0.942025
Target:  5'- -gGCGUGUACauuccauaggggGCGCugguCCGAGCCCGCa -3'
miRNA:   3'- uaUGCGUAUG------------CGCGc---GGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 107016 0.66 0.946135
Target:  5'- -cGCGC--GCGCuuGCCGGguuggccGCCCGCGg -3'
miRNA:   3'- uaUGCGuaUGCGcgCGGUU-------UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 74758 0.66 0.932179
Target:  5'- -aGCGCGggaGCGgGCgAAggugGCCCGCGa -3'
miRNA:   3'- uaUGCGUaugCGCgCGgUU----UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 82617 0.67 0.903239
Target:  5'- ---aGC--ACGCGCGUCAGcCCCGCa -3'
miRNA:   3'- uaugCGuaUGCGCGCGGUUuGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 73285 0.67 0.926885
Target:  5'- --cCGCGUGCucCGcCGCCcuGGCCCGCGa -3'
miRNA:   3'- uauGCGUAUGc-GC-GCGGu-UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 99691 0.67 0.896717
Target:  5'- -gGgGCAUGgGa-CGCCGGACCCugGg -3'
miRNA:   3'- uaUgCGUAUgCgcGCGGUUUGGGugC- -5'
5591 5' -54.3 NC_001806.1 + 29793 0.67 0.903239
Target:  5'- -cACGCAgagGCGC-CGCCGcGCCCcccgugACGg -3'
miRNA:   3'- uaUGCGUa--UGCGcGCGGUuUGGG------UGC- -5'
5591 5' -54.3 NC_001806.1 + 147744 0.67 0.903239
Target:  5'- -cGCGCGgggGCGCGCGggucCCGAcgcGgCCGCGg -3'
miRNA:   3'- uaUGCGUa--UGCGCGC----GGUU---UgGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 104402 0.67 0.909519
Target:  5'- cUGCGCGUucuCGCG-GCCAuaacAACCgACGu -3'
miRNA:   3'- uAUGCGUAu--GCGCgCGGU----UUGGgUGC- -5'
5591 5' -54.3 NC_001806.1 + 24454 0.67 0.91377
Target:  5'- cGUGCGC--ACGCGCuucggcccggacacGCCGGuGCCCAUGu -3'
miRNA:   3'- -UAUGCGuaUGCGCG--------------CGGUU-UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 4338 0.67 0.909519
Target:  5'- -cGCGCGggcccgGCG-GCGCuCGAugcgGCCCGCGg -3'
miRNA:   3'- uaUGCGUa-----UGCgCGCG-GUU----UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 26964 0.67 0.903239
Target:  5'- --cCGCcUG-GCGCGCCGcggcucgugGGCCCGCGa -3'
miRNA:   3'- uauGCGuAUgCGCGCGGU---------UUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 21485 0.67 0.909519
Target:  5'- -gACGCAgccgACGCcgccgGCGaCCGGGCCC-CGg -3'
miRNA:   3'- uaUGCGUa---UGCG-----CGC-GGUUUGGGuGC- -5'
5591 5' -54.3 NC_001806.1 + 49274 0.67 0.909519
Target:  5'- --cCGCc--CGUGCGCCGucgacgggaaGGCCCGCGa -3'
miRNA:   3'- uauGCGuauGCGCGCGGU----------UUGGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.