miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5591 5' -54.3 NC_001806.1 + 21485 0.67 0.909519
Target:  5'- -gACGCAgccgACGCcgccgGCGaCCGGGCCC-CGg -3'
miRNA:   3'- uaUGCGUa---UGCG-----CGC-GGUUUGGGuGC- -5'
5591 5' -54.3 NC_001806.1 + 21545 0.69 0.852721
Target:  5'- cUACGCG-GCGCGUauCCGGAcCCCACGg -3'
miRNA:   3'- uAUGCGUaUGCGCGc-GGUUU-GGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 21901 0.76 0.432535
Target:  5'- --cCGCAUcgaGCGC-CGCCGGGCCCGCGc -3'
miRNA:   3'- uauGCGUA---UGCGcGCGGUUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 22378 0.67 0.926885
Target:  5'- -gGCaGCGUgGCGCGgGCCGugcCCCACc -3'
miRNA:   3'- uaUG-CGUA-UGCGCgCGGUuu-GGGUGc -5'
5591 5' -54.3 NC_001806.1 + 22525 0.66 0.946579
Target:  5'- -cGCGCcUACGCGCcCCuguuGGCgCGCGa -3'
miRNA:   3'- uaUGCGuAUGCGCGcGGu---UUGgGUGC- -5'
5591 5' -54.3 NC_001806.1 + 22759 0.72 0.683466
Target:  5'- -gACGCcgACGaCGaCGCCGGGCgCCGCGc -3'
miRNA:   3'- uaUGCGuaUGC-GC-GCGGUUUG-GGUGC- -5'
5591 5' -54.3 NC_001806.1 + 22959 0.66 0.932179
Target:  5'- -cACGCcgACGCGCcCC--GCCUGCGc -3'
miRNA:   3'- uaUGCGuaUGCGCGcGGuuUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 23027 0.69 0.852721
Target:  5'- cAUGCGCcUGCGCggggaccuGCGCguGGCCgGCGg -3'
miRNA:   3'- -UAUGCGuAUGCG--------CGCGguUUGGgUGC- -5'
5591 5' -54.3 NC_001806.1 + 23130 0.68 0.88296
Target:  5'- --cCGCGggaccCGCGCcuGCCGAGCuCCGCGg -3'
miRNA:   3'- uauGCGUau---GCGCG--CGGUUUG-GGUGC- -5'
5591 5' -54.3 NC_001806.1 + 23612 0.69 0.836334
Target:  5'- cUACuGCuccccGCGCGCcgugGCCGAGCUCACGg -3'
miRNA:   3'- uAUG-CGua---UGCGCG----CGGUUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 23717 0.74 0.569303
Target:  5'- -cGCGCG---GUGCGCCGGGCCCGCc -3'
miRNA:   3'- uaUGCGUaugCGCGCGGUUUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 23817 0.68 0.86828
Target:  5'- uUugGCccccUGCGCGCCucgGGCCCGCu -3'
miRNA:   3'- uAugCGuau-GCGCGCGGu--UUGGGUGc -5'
5591 5' -54.3 NC_001806.1 + 24199 0.7 0.781879
Target:  5'- -cAC-CGUGCGCGCcugcgacuggcccGCCGAcggGCCCGCGg -3'
miRNA:   3'- uaUGcGUAUGCGCG-------------CGGUU---UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 24288 0.72 0.703995
Target:  5'- aGUGCGcCGUGCGCuggccggcgGCGCgGGACCUGCGc -3'
miRNA:   3'- -UAUGC-GUAUGCG---------CGCGgUUUGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 24372 0.74 0.569303
Target:  5'- -cGCGCGUggaggccgcgcACGCGCGCCuguACCC-CGa -3'
miRNA:   3'- uaUGCGUA-----------UGCGCGCGGuu-UGGGuGC- -5'
5591 5' -54.3 NC_001806.1 + 24409 0.68 0.88296
Target:  5'- -cGCGCcgcCGCuGCGCCuGugCCGCGg -3'
miRNA:   3'- uaUGCGuauGCG-CGCGGuUugGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 24454 0.67 0.91377
Target:  5'- cGUGCGC--ACGCGCuucggcccggacacGCCGGuGCCCAUGu -3'
miRNA:   3'- -UAUGCGuaUGCGCG--------------CGGUU-UGGGUGC- -5'
5591 5' -54.3 NC_001806.1 + 24571 0.67 0.926885
Target:  5'- -gGCGCccg-GCGCGCCGGACUUcuGCGa -3'
miRNA:   3'- uaUGCGuaugCGCGCGGUUUGGG--UGC- -5'
5591 5' -54.3 NC_001806.1 + 24614 0.73 0.631534
Target:  5'- -cACGCcgccUGCGCGCGCUggGgCCugGg -3'
miRNA:   3'- uaUGCGu---AUGCGCGCGGuuUgGGugC- -5'
5591 5' -54.3 NC_001806.1 + 24675 0.66 0.932179
Target:  5'- -gGCGCgaggcgGUGCGCGCcgGCCcGGCCCGg- -3'
miRNA:   3'- uaUGCG------UAUGCGCG--CGGuUUGGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.