miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5592 3' -62.6 NC_001806.1 + 24782 0.76 0.175572
Target:  5'- cGCGGCGACGacgaCGG-CCCGGGGGCc- -3'
miRNA:   3'- cUGUCGCUGCg---GCCaGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 24870 0.66 0.58607
Target:  5'- uGGCGGCGGCggggGCCguggaGGUgCUGGGGGCg- -3'
miRNA:   3'- -CUGUCGCUG----CGG-----CCAgGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 30398 0.71 0.334492
Target:  5'- cGACGGUGGCGCgCGG-CUCGGGGGggCc -3'
miRNA:   3'- -CUGUCGCUGCG-GCCaGGGCCUCCgaG- -5'
5592 3' -62.6 NC_001806.1 + 34316 0.66 0.58607
Target:  5'- gGGCGGCG-CGCCGGa--CGGGGcGCUg -3'
miRNA:   3'- -CUGUCGCuGCGGCCaggGCCUC-CGAg -5'
5592 3' -62.6 NC_001806.1 + 34399 0.66 0.58607
Target:  5'- gGGCGGCgGugGCCGGgCCgGGccGGGC-Cg -3'
miRNA:   3'- -CUGUCG-CugCGGCCaGGgCC--UCCGaG- -5'
5592 3' -62.6 NC_001806.1 + 36538 0.66 0.585097
Target:  5'- aGCAGUGGauugugcCGCUGGUCUCacaGGAGGCg- -3'
miRNA:   3'- cUGUCGCU-------GCGGCCAGGG---CCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 38149 0.66 0.615375
Target:  5'- aGACGGU--CGCCGGgCCCcGAGGCg- -3'
miRNA:   3'- -CUGUCGcuGCGGCCaGGGcCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 38394 0.68 0.482069
Target:  5'- cGCGGCGGCucuccGCCGG-CUCGGGGGggucCUCg -3'
miRNA:   3'- cUGUCGCUG-----CGGCCaGGGCCUCC----GAG- -5'
5592 3' -62.6 NC_001806.1 + 42636 0.76 0.159317
Target:  5'- cGCGGCGGCGUCGcGUCCggugCGGGGGCUg -3'
miRNA:   3'- cUGUCGCUGCGGC-CAGG----GCCUCCGAg -5'
5592 3' -62.6 NC_001806.1 + 44831 0.67 0.547452
Target:  5'- cACGuCGAccCGCagGGUCCCGGGGGCa- -3'
miRNA:   3'- cUGUcGCU--GCGg-CCAGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 49597 0.69 0.446438
Target:  5'- cGGCGGCGGgGCCcGUUCCccgcccaagguGGAGGUUCu -3'
miRNA:   3'- -CUGUCGCUgCGGcCAGGG-----------CCUCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 49640 0.68 0.500395
Target:  5'- gGAC-GCG-UGCCGGgCCCGGAG-CUCc -3'
miRNA:   3'- -CUGuCGCuGCGGCCaGGGCCUCcGAG- -5'
5592 3' -62.6 NC_001806.1 + 50544 0.66 0.58607
Target:  5'- cGCAGCG-CGCCGGcugCUCGccaacagcGGGCUCa -3'
miRNA:   3'- cUGUCGCuGCGGCCa--GGGCc-------UCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 55222 0.67 0.562817
Target:  5'- cGGCAGCGGC-CCGGUgacagaauacaaCGGAGGgUCg -3'
miRNA:   3'- -CUGUCGCUGcGGCCAgg----------GCCUCCgAG- -5'
5592 3' -62.6 NC_001806.1 + 57027 0.67 0.55704
Target:  5'- aGGCAcuGgGugGCCGGgCCCGG-GGC-Cg -3'
miRNA:   3'- -CUGU--CgCugCGGCCaGGGCCuCCGaG- -5'
5592 3' -62.6 NC_001806.1 + 62303 0.67 0.537915
Target:  5'- cGACAGUGGCGgCGGgCCUggcgcggaGGGGGUUUg -3'
miRNA:   3'- -CUGUCGCUGCgGCCaGGG--------CCUCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 63856 0.69 0.455211
Target:  5'- gGGCGGgcaUGACGCugCGGUCCCGG-GGC-Cg -3'
miRNA:   3'- -CUGUC---GCUGCG--GCCAGGGCCuCCGaG- -5'
5592 3' -62.6 NC_001806.1 + 64955 0.69 0.429181
Target:  5'- cGGCGuCGGCGCCcgggccgggGGUCCCGG-GGCa- -3'
miRNA:   3'- -CUGUcGCUGCGG---------CCAGGGCCuCCGag -5'
5592 3' -62.6 NC_001806.1 + 65451 0.67 0.528437
Target:  5'- --gGGgGAUGCCgcggcccccgGGUCCUGGGGGCg- -3'
miRNA:   3'- cugUCgCUGCGG----------CCAGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 66813 0.7 0.404049
Target:  5'- cGGCcgAGCGGgGCCGG-CCCGGGuGGC-Cg -3'
miRNA:   3'- -CUG--UCGCUgCGGCCaGGGCCU-CCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.