miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5592 3' -62.6 NC_001806.1 + 2681 0.72 0.280365
Target:  5'- cGCcGUGugGCUGGgcCCCGGGGGCUg -3'
miRNA:   3'- cUGuCGCugCGGCCa-GGGCCUCCGAg -5'
5592 3' -62.6 NC_001806.1 + 2812 0.68 0.491192
Target:  5'- gGGCGGgGGCGggcUCGGgcCCCGGGGGCg- -3'
miRNA:   3'- -CUGUCgCUGC---GGCCa-GGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 3091 0.7 0.364293
Target:  5'- cGCGGCGGCGgCGG-CCgCGGAG-CUCg -3'
miRNA:   3'- cUGUCGCUGCgGCCaGG-GCCUCcGAG- -5'
5592 3' -62.6 NC_001806.1 + 3133 0.68 0.482069
Target:  5'- cGGCAGCGcgGgGCCcagGGcCCCGGcgaccAGGCUCa -3'
miRNA:   3'- -CUGUCGC--UgCGG---CCaGGGCC-----UCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 3310 0.7 0.404049
Target:  5'- cGGCGGCGGggaagcggggccCGCgGGUCCCuccggccgcgGGGGGCUg -3'
miRNA:   3'- -CUGUCGCU------------GCGgCCAGGG----------CCUCCGAg -5'
5592 3' -62.6 NC_001806.1 + 3512 0.66 0.615375
Target:  5'- uGGCgGGCGGCGUCGGggucgucgCCCcccgcgggGGAGGCg- -3'
miRNA:   3'- -CUG-UCGCUGCGGCCa-------GGG--------CCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 3592 0.66 0.625174
Target:  5'- ---cGCGGCGCCGuaCCCGGcGGGCa- -3'
miRNA:   3'- cuguCGCUGCGGCcaGGGCC-UCCGag -5'
5592 3' -62.6 NC_001806.1 + 3645 0.72 0.309231
Target:  5'- cGGCGGCGacccccucgucaucuGCGCCGG-CgCCGG-GGCUCc -3'
miRNA:   3'- -CUGUCGC---------------UGCGGCCaG-GGCCuCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 4347 0.68 0.519021
Target:  5'- -cCGGCGGCGCucgaugCGGcCCgCGGAGGC-Cg -3'
miRNA:   3'- cuGUCGCUGCG------GCCaGG-GCCUCCGaG- -5'
5592 3' -62.6 NC_001806.1 + 4440 0.72 0.293213
Target:  5'- cGGgGGCGGCGUCcG-CCCGGGGGCUg -3'
miRNA:   3'- -CUgUCGCUGCGGcCaGGGCCUCCGAg -5'
5592 3' -62.6 NC_001806.1 + 5093 0.68 0.500395
Target:  5'- gGGCGGCGGCccGUCGGUggggCCCGGGGaGC-Cg -3'
miRNA:   3'- -CUGUCGCUG--CGGCCA----GGGCCUC-CGaG- -5'
5592 3' -62.6 NC_001806.1 + 6049 0.73 0.272256
Target:  5'- --uGGCGccgugcccgacuccGCGCCGGcCCCGGGGGCg- -3'
miRNA:   3'- cugUCGC--------------UGCGGCCaGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 13643 0.68 0.509672
Target:  5'- uACA-CG-CGCCGGaccCCCGGAGGgUCg -3'
miRNA:   3'- cUGUcGCuGCGGCCa--GGGCCUCCgAG- -5'
5592 3' -62.6 NC_001806.1 + 15334 0.67 0.528437
Target:  5'- -uCGGUGGUGCCGGUCUgggucauguUGGGGGCUUc -3'
miRNA:   3'- cuGUCGCUGCGGCCAGG---------GCCUCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 20605 0.67 0.546495
Target:  5'- uGGCAGaUGGCGCggaugggCGGggCCGGGGGUUCg -3'
miRNA:   3'- -CUGUC-GCUGCG-------GCCagGGCCUCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 22151 0.69 0.412323
Target:  5'- aGGC-GCGACGCCGGUUC--GAGGcCUCg -3'
miRNA:   3'- -CUGuCGCUGCGGCCAGGgcCUCC-GAG- -5'
5592 3' -62.6 NC_001806.1 + 22860 0.73 0.256019
Target:  5'- cGACGGCGACcuggcgGCC-GUCCCGG-GGCUg -3'
miRNA:   3'- -CUGUCGCUG------CGGcCAGGGCCuCCGAg -5'
5592 3' -62.6 NC_001806.1 + 23305 0.66 0.605586
Target:  5'- -cCGGCccGGC-CCGGccgCCCGGAGGCg- -3'
miRNA:   3'- cuGUCG--CUGcGGCCa--GGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 23579 0.69 0.455211
Target:  5'- cACGGCGGCGCCcgcGGccgccgcCCUGGAGGCc- -3'
miRNA:   3'- cUGUCGCUGCGG---CCa------GGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 24681 0.73 0.250209
Target:  5'- aGGCGGUGcGCGCCGGcccggCCCGGuGGCg- -3'
miRNA:   3'- -CUGUCGC-UGCGGCCa----GGGCCuCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.