Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5592 | 3' | -62.6 | NC_001806.1 | + | 130461 | 0.66 | 0.634979 |
Target: 5'- aGCuGCGGUGCCGGgaUCCC-GAGGCgUCg -3' miRNA: 3'- cUGuCGCUGCGGCC--AGGGcCUCCG-AG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 149366 | 0.72 | 0.297817 |
Target: 5'- cACGGCGACcCCGGUCCUuguguguuuguuguGGGGGCg- -3' miRNA: 3'- cUGUCGCUGcGGCCAGGG--------------CCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 3645 | 0.72 | 0.309231 |
Target: 5'- cGGCGGCGacccccucgucaucuGCGCCGG-CgCCGG-GGCUCc -3' miRNA: 3'- -CUGUCGC---------------UGCGGCCaG-GGCCuCCGAG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 68719 | 0.71 | 0.320275 |
Target: 5'- --aAGaUGGCGCCGGUCCCGuuGGGGCa- -3' miRNA: 3'- cugUC-GCUGCGGCCAGGGC--CUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 30398 | 0.71 | 0.334492 |
Target: 5'- cGACGGUGGCGCgCGG-CUCGGGGGggCc -3' miRNA: 3'- -CUGUCGCUGCG-GCCaGGGCCUCCgaG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 3091 | 0.7 | 0.364293 |
Target: 5'- cGCGGCGGCGgCGG-CCgCGGAG-CUCg -3' miRNA: 3'- cUGUCGCUGCgGCCaGG-GCCUCcGAG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 126414 | 0.7 | 0.372024 |
Target: 5'- uGAUGGC-ACaCCGGUcCCCGGAGGCg- -3' miRNA: 3'- -CUGUCGcUGcGGCCA-GGGCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 66813 | 0.7 | 0.404049 |
Target: 5'- cGGCcgAGCGGgGCCGG-CCCGGGuGGC-Cg -3' miRNA: 3'- -CUG--UCGCUgCGGCCaGGGCCU-CCGaG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 3310 | 0.7 | 0.404049 |
Target: 5'- cGGCGGCGGggaagcggggccCGCgGGUCCCuccggccgcgGGGGGCUg -3' miRNA: 3'- -CUGUCGCU------------GCGgCCAGGG----------CCUCCGAg -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 4440 | 0.72 | 0.293213 |
Target: 5'- cGGgGGCGGCGUCcG-CCCGGGGGCUg -3' miRNA: 3'- -CUgUCGCUGCGGcCaGGGCCUCCGAg -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 85994 | 0.72 | 0.286732 |
Target: 5'- cGGCAgGCGACGgCGucUCCCGGGGGCg- -3' miRNA: 3'- -CUGU-CGCUGCgGCc-AGGGCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 2681 | 0.72 | 0.280365 |
Target: 5'- cGCcGUGugGCUGGgcCCCGGGGGCUg -3' miRNA: 3'- cUGuCGCugCGGCCa-GGGCCUCCGAg -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 42636 | 0.76 | 0.159317 |
Target: 5'- cGCGGCGGCGUCGcGUCCggugCGGGGGCUg -3' miRNA: 3'- cUGUCGCUGCGGC-CAGG----GCCUCCGAg -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 24782 | 0.76 | 0.175572 |
Target: 5'- cGCGGCGACGacgaCGG-CCCGGGGGCc- -3' miRNA: 3'- cUGUCGCUGCg---GCCaGGGCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 133678 | 0.74 | 0.207581 |
Target: 5'- uGGCGGCG-CGUCGugcgugucuGUCCCGGAGGCg- -3' miRNA: 3'- -CUGUCGCuGCGGC---------CAGGGCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 93568 | 0.74 | 0.228054 |
Target: 5'- cGACAacGCGACGCCGuucggcggCCCGGGGGCc- -3' miRNA: 3'- -CUGU--CGCUGCGGCca------GGGCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 144868 | 0.73 | 0.238917 |
Target: 5'- cGGCAcGCGACGCgaaaaaGGcccCCCGGAGGCUUu -3' miRNA: 3'- -CUGU-CGCUGCGg-----CCa--GGGCCUCCGAG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 24681 | 0.73 | 0.250209 |
Target: 5'- aGGCGGUGcGCGCCGGcccggCCCGGuGGCg- -3' miRNA: 3'- -CUGUCGC-UGCGGCCa----GGGCCuCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 22860 | 0.73 | 0.256019 |
Target: 5'- cGACGGCGACcuggcgGCC-GUCCCGG-GGCUg -3' miRNA: 3'- -CUGUCGCUG------CGGcCAGGGCCuCCGAg -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 6049 | 0.73 | 0.272256 |
Target: 5'- --uGGCGccgugcccgacuccGCGCCGGcCCCGGGGGCg- -3' miRNA: 3'- cugUCGC--------------UGCGGCCaGGGCCUCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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