Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5592 | 3' | -62.6 | NC_001806.1 | + | 130461 | 0.66 | 0.634979 |
Target: 5'- aGCuGCGGUGCCGGgaUCCC-GAGGCgUCg -3' miRNA: 3'- cUGuCGCUGCGGCC--AGGGcCUCCG-AG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 113382 | 0.66 | 0.595816 |
Target: 5'- -cCGGCGGCGuuCCGGgacgCCCGG-GGCc- -3' miRNA: 3'- cuGUCGCUGC--GGCCa---GGGCCuCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 76327 | 0.66 | 0.58607 |
Target: 5'- cGGCGGCGGcCGCCGagcuuGUCCgGGcaGGGgUCa -3' miRNA: 3'- -CUGUCGCU-GCGGC-----CAGGgCC--UCCgAG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 36538 | 0.66 | 0.585097 |
Target: 5'- aGCAGUGGauugugcCGCUGGUCUCacaGGAGGCg- -3' miRNA: 3'- cUGUCGCU-------GCGGCCAGGG---CCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 147495 | 0.66 | 0.605586 |
Target: 5'- --gGGCGGCGCCGGa---GGGGGCg- -3' miRNA: 3'- cugUCGCUGCGGCCagggCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 50544 | 0.66 | 0.58607 |
Target: 5'- cGCAGCG-CGCCGGcugCUCGccaacagcGGGCUCa -3' miRNA: 3'- cUGUCGCuGCGGCCa--GGGCc-------UCCGAG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 3592 | 0.66 | 0.625174 |
Target: 5'- ---cGCGGCGCCGuaCCCGGcGGGCa- -3' miRNA: 3'- cuguCGCUGCGGCcaGGGCC-UCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 34316 | 0.66 | 0.58607 |
Target: 5'- gGGCGGCG-CGCCGGa--CGGGGcGCUg -3' miRNA: 3'- -CUGUCGCuGCGGCCaggGCCUC-CGAg -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 38149 | 0.66 | 0.615375 |
Target: 5'- aGACGGU--CGCCGGgCCCcGAGGCg- -3' miRNA: 3'- -CUGUCGcuGCGGCCaGGGcCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 34399 | 0.66 | 0.58607 |
Target: 5'- gGGCGGCgGugGCCGGgCCgGGccGGGC-Cg -3' miRNA: 3'- -CUGUCG-CugCGGCCaGGgCC--UCCGaG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 102945 | 0.66 | 0.605586 |
Target: 5'- ---cGCGACgGCCaGaCCCGGGGGCg- -3' miRNA: 3'- cuguCGCUG-CGGcCaGGGCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 23305 | 0.66 | 0.605586 |
Target: 5'- -cCGGCccGGC-CCGGccgCCCGGAGGCg- -3' miRNA: 3'- cuGUCG--CUGcGGCCa--GGGCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 147768 | 0.66 | 0.58607 |
Target: 5'- cGCGGCcgcgGACGCgGGgggCCCGG-GGCg- -3' miRNA: 3'- cUGUCG----CUGCGgCCa--GGGCCuCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 24870 | 0.66 | 0.58607 |
Target: 5'- uGGCGGCGGCggggGCCguggaGGUgCUGGGGGCg- -3' miRNA: 3'- -CUGUCGCUG----CGG-----CCAgGGCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 3512 | 0.66 | 0.615375 |
Target: 5'- uGGCgGGCGGCGUCGGggucgucgCCCcccgcgggGGAGGCg- -3' miRNA: 3'- -CUG-UCGCUGCGGCCa-------GGG--------CCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 20605 | 0.67 | 0.546495 |
Target: 5'- uGGCAGaUGGCGCggaugggCGGggCCGGGGGUUCg -3' miRNA: 3'- -CUGUC-GCUGCG-------GCCagGGCCUCCGAG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 65451 | 0.67 | 0.528437 |
Target: 5'- --gGGgGAUGCCgcggcccccgGGUCCUGGGGGCg- -3' miRNA: 3'- cugUCgCUGCGG----------CCAGGGCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 62303 | 0.67 | 0.537915 |
Target: 5'- cGACAGUGGCGgCGGgCCUggcgcggaGGGGGUUUg -3' miRNA: 3'- -CUGUCGCUGCgGCCaGGG--------CCUCCGAG- -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 44831 | 0.67 | 0.547452 |
Target: 5'- cACGuCGAccCGCagGGUCCCGGGGGCa- -3' miRNA: 3'- cUGUcGCU--GCGg-CCAGGGCCUCCGag -5' |
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5592 | 3' | -62.6 | NC_001806.1 | + | 117760 | 0.67 | 0.576355 |
Target: 5'- uGGCguGGCGACgGCCGaGUCCUGGcuGCUa -3' miRNA: 3'- -CUG--UCGCUG-CGGC-CAGGGCCucCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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