miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5592 3' -62.6 NC_001806.1 + 117963 1.09 0.000716
Target:  5'- cGACAGCGACGCCGGUCCCGGAGGCUCg -3'
miRNA:   3'- -CUGUCGCUGCGGCCAGGGCCUCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 42636 0.76 0.159317
Target:  5'- cGCGGCGGCGUCGcGUCCggugCGGGGGCUg -3'
miRNA:   3'- cUGUCGCUGCGGC-CAGG----GCCUCCGAg -5'
5592 3' -62.6 NC_001806.1 + 24782 0.76 0.175572
Target:  5'- cGCGGCGACGacgaCGG-CCCGGGGGCc- -3'
miRNA:   3'- cUGUCGCUGCg---GCCaGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 133678 0.74 0.207581
Target:  5'- uGGCGGCG-CGUCGugcgugucuGUCCCGGAGGCg- -3'
miRNA:   3'- -CUGUCGCuGCGGC---------CAGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 93568 0.74 0.228054
Target:  5'- cGACAacGCGACGCCGuucggcggCCCGGGGGCc- -3'
miRNA:   3'- -CUGU--CGCUGCGGCca------GGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 144868 0.73 0.238917
Target:  5'- cGGCAcGCGACGCgaaaaaGGcccCCCGGAGGCUUu -3'
miRNA:   3'- -CUGU-CGCUGCGg-----CCa--GGGCCUCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 24681 0.73 0.250209
Target:  5'- aGGCGGUGcGCGCCGGcccggCCCGGuGGCg- -3'
miRNA:   3'- -CUGUCGC-UGCGGCCa----GGGCCuCCGag -5'
5592 3' -62.6 NC_001806.1 + 22860 0.73 0.256019
Target:  5'- cGACGGCGACcuggcgGCC-GUCCCGG-GGCUg -3'
miRNA:   3'- -CUGUCGCUG------CGGcCAGGGCCuCCGAg -5'
5592 3' -62.6 NC_001806.1 + 6049 0.73 0.272256
Target:  5'- --uGGCGccgugcccgacuccGCGCCGGcCCCGGGGGCg- -3'
miRNA:   3'- cugUCGC--------------UGCGGCCaGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 2681 0.72 0.280365
Target:  5'- cGCcGUGugGCUGGgcCCCGGGGGCUg -3'
miRNA:   3'- cUGuCGCugCGGCCa-GGGCCUCCGAg -5'
5592 3' -62.6 NC_001806.1 + 85994 0.72 0.286732
Target:  5'- cGGCAgGCGACGgCGucUCCCGGGGGCg- -3'
miRNA:   3'- -CUGU-CGCUGCgGCc-AGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 4440 0.72 0.293213
Target:  5'- cGGgGGCGGCGUCcG-CCCGGGGGCUg -3'
miRNA:   3'- -CUgUCGCUGCGGcCaGGGCCUCCGAg -5'
5592 3' -62.6 NC_001806.1 + 149366 0.72 0.297817
Target:  5'- cACGGCGACcCCGGUCCUuguguguuuguuguGGGGGCg- -3'
miRNA:   3'- cUGUCGCUGcGGCCAGGG--------------CCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 3645 0.72 0.309231
Target:  5'- cGGCGGCGacccccucgucaucuGCGCCGG-CgCCGG-GGCUCc -3'
miRNA:   3'- -CUGUCGC---------------UGCGGCCaG-GGCCuCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 68719 0.71 0.320275
Target:  5'- --aAGaUGGCGCCGGUCCCGuuGGGGCa- -3'
miRNA:   3'- cugUC-GCUGCGGCCAGGGC--CUCCGag -5'
5592 3' -62.6 NC_001806.1 + 30398 0.71 0.334492
Target:  5'- cGACGGUGGCGCgCGG-CUCGGGGGggCc -3'
miRNA:   3'- -CUGUCGCUGCG-GCCaGGGCCUCCgaG- -5'
5592 3' -62.6 NC_001806.1 + 3091 0.7 0.364293
Target:  5'- cGCGGCGGCGgCGG-CCgCGGAG-CUCg -3'
miRNA:   3'- cUGUCGCUGCgGCCaGG-GCCUCcGAG- -5'
5592 3' -62.6 NC_001806.1 + 126414 0.7 0.372024
Target:  5'- uGAUGGC-ACaCCGGUcCCCGGAGGCg- -3'
miRNA:   3'- -CUGUCGcUGcGGCCA-GGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 66813 0.7 0.404049
Target:  5'- cGGCcgAGCGGgGCCGG-CCCGGGuGGC-Cg -3'
miRNA:   3'- -CUG--UCGCUgCGGCCaGGGCCU-CCGaG- -5'
5592 3' -62.6 NC_001806.1 + 3310 0.7 0.404049
Target:  5'- cGGCGGCGGggaagcggggccCGCgGGUCCCuccggccgcgGGGGGCUg -3'
miRNA:   3'- -CUGUCGCU------------GCGgCCAGGG----------CCUCCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.