miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5592 5' -53.3 NC_001806.1 + 118000 1.07 0.00707
Target:  5'- cGUGAACGCGGGAUCCACGUACACGUAc -3'
miRNA:   3'- -CACUUGCGCCCUAGGUGCAUGUGCAU- -5'
5592 5' -53.3 NC_001806.1 + 139966 0.73 0.689978
Target:  5'- -cGAACGCGGGugggacgCCcauAUGUACGCGUAu -3'
miRNA:   3'- caCUUGCGCCCua-----GG---UGCAUGUGCAU- -5'
5592 5' -53.3 NC_001806.1 + 64733 0.72 0.720609
Target:  5'- aUGAGCGCGGG-UUCGCGguuCACGg- -3'
miRNA:   3'- cACUUGCGCCCuAGGUGCau-GUGCau -5'
5592 5' -53.3 NC_001806.1 + 40567 0.71 0.788864
Target:  5'- cGUGAAaauggaagcgcCGCGGG-UCgGCGUGCGCGg- -3'
miRNA:   3'- -CACUU-----------GCGCCCuAGgUGCAUGUGCau -5'
5592 5' -53.3 NC_001806.1 + 38881 0.71 0.797188
Target:  5'- aUGGGCGgggucguUGGGAUCCAgGcUACACGUGg -3'
miRNA:   3'- cACUUGC-------GCCCUAGGUgC-AUGUGCAU- -5'
5592 5' -53.3 NC_001806.1 + 11318 0.71 0.816109
Target:  5'- gGUGGguguCGUGGGGUCCACGggGgGCGUc -3'
miRNA:   3'- -CACUu---GCGCCCUAGGUGCa-UgUGCAu -5'
5592 5' -53.3 NC_001806.1 + 50327 0.7 0.824854
Target:  5'- --uGACGCGGGAggccgccuUCCugGgGCGCGUGc -3'
miRNA:   3'- cacUUGCGCCCU--------AGGugCaUGUGCAU- -5'
5592 5' -53.3 NC_001806.1 + 37794 0.7 0.833418
Target:  5'- -gGGGCGCgGGGGUCCGCGgGCGgGg- -3'
miRNA:   3'- caCUUGCG-CCCUAGGUGCaUGUgCau -5'
5592 5' -53.3 NC_001806.1 + 102140 0.69 0.865693
Target:  5'- uUGAG-GCGG--UCCGCGUACACGUu -3'
miRNA:   3'- cACUUgCGCCcuAGGUGCAUGUGCAu -5'
5592 5' -53.3 NC_001806.1 + 75982 0.69 0.873232
Target:  5'- -gGAGCGCGgccuucGGggCCGCGgccgACACGUAc -3'
miRNA:   3'- caCUUGCGC------CCuaGGUGCa---UGUGCAU- -5'
5592 5' -53.3 NC_001806.1 + 20819 0.69 0.880547
Target:  5'- -gGAGCGCGgcugccgacacGGAUCCACGacccgACGCGg- -3'
miRNA:   3'- caCUUGCGC-----------CCUAGGUGCa----UGUGCau -5'
5592 5' -53.3 NC_001806.1 + 147034 0.69 0.897156
Target:  5'- cGUGAGgccgccCGCGGGGacggccccggaagucUCCGCGUgGCGCGUc -3'
miRNA:   3'- -CACUU------GCGCCCU---------------AGGUGCA-UGUGCAu -5'
5592 5' -53.3 NC_001806.1 + 50763 0.69 0.901094
Target:  5'- cGUGAcacuggccgcguuugACGgGGGAUUCACGgcccccgagguggGCACGUAc -3'
miRNA:   3'- -CACU---------------UGCgCCCUAGGUGCa------------UGUGCAU- -5'
5592 5' -53.3 NC_001806.1 + 77385 0.68 0.913589
Target:  5'- -cGGGCGCGGGcgCgGCGgcCGCGc- -3'
miRNA:   3'- caCUUGCGCCCuaGgUGCauGUGCau -5'
5592 5' -53.3 NC_001806.1 + 147750 0.68 0.913589
Target:  5'- -gGGGCGCGcGGGUCC-CG-ACGCGg- -3'
miRNA:   3'- caCUUGCGC-CCUAGGuGCaUGUGCau -5'
5592 5' -53.3 NC_001806.1 + 53140 0.68 0.919468
Target:  5'- aUGGAUGCGGGucuacgaaaacGUCUGCGUgaACACGg- -3'
miRNA:   3'- cACUUGCGCCC-----------UAGGUGCA--UGUGCau -5'
5592 5' -53.3 NC_001806.1 + 23861 0.68 0.919468
Target:  5'- cUGGAUGCGccaGAUCCccgaccccgaggACGUGCGCGUGg -3'
miRNA:   3'- cACUUGCGCc--CUAGG------------UGCAUGUGCAU- -5'
5592 5' -53.3 NC_001806.1 + 41798 0.68 0.925099
Target:  5'- uUGGugGCGGaGUCCACGgccccgcaaUACGCGg- -3'
miRNA:   3'- cACUugCGCCcUAGGUGC---------AUGUGCau -5'
5592 5' -53.3 NC_001806.1 + 42759 0.67 0.940502
Target:  5'- uUGua-GCGGGGUCC-CGUGCGCc-- -3'
miRNA:   3'- cACuugCGCCCUAGGuGCAUGUGcau -5'
5592 5' -53.3 NC_001806.1 + 71755 0.67 0.945142
Target:  5'- -gGAACGCGGGGgggaUCGCG-ACAuCGUGg -3'
miRNA:   3'- caCUUGCGCCCUa---GGUGCaUGU-GCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.