Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5592 | 5' | -53.3 | NC_001806.1 | + | 25514 | 0.66 | 0.971007 |
Target: 5'- -gGAGCGCGGGAcgcgCCGgGgaggGCugGg- -3' miRNA: 3'- caCUUGCGCCCUa---GGUgCa---UGugCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 50763 | 0.69 | 0.901094 |
Target: 5'- cGUGAcacuggccgcguuugACGgGGGAUUCACGgcccccgagguggGCACGUAc -3' miRNA: 3'- -CACU---------------UGCgCCCUAGGUGCa------------UGUGCAU- -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 77385 | 0.68 | 0.913589 |
Target: 5'- -cGGGCGCGGGcgCgGCGgcCGCGc- -3' miRNA: 3'- caCUUGCGCCCuaGgUGCauGUGCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 147750 | 0.68 | 0.913589 |
Target: 5'- -gGGGCGCGcGGGUCC-CG-ACGCGg- -3' miRNA: 3'- caCUUGCGC-CCUAGGuGCaUGUGCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 23861 | 0.68 | 0.919468 |
Target: 5'- cUGGAUGCGccaGAUCCccgaccccgaggACGUGCGCGUGg -3' miRNA: 3'- cACUUGCGCc--CUAGG------------UGCAUGUGCAU- -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 53140 | 0.68 | 0.919468 |
Target: 5'- aUGGAUGCGGGucuacgaaaacGUCUGCGUgaACACGg- -3' miRNA: 3'- cACUUGCGCCC-----------UAGGUGCA--UGUGCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 41798 | 0.68 | 0.925099 |
Target: 5'- uUGGugGCGGaGUCCACGgccccgcaaUACGCGg- -3' miRNA: 3'- cACUugCGCCcUAGGUGC---------AUGUGCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 42759 | 0.67 | 0.940502 |
Target: 5'- uUGua-GCGGGGUCC-CGUGCGCc-- -3' miRNA: 3'- cACuugCGCCCUAGGuGCAUGUGcau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 25945 | 0.67 | 0.945142 |
Target: 5'- cGUGGGgGCGGGG-CCGCGggaGCGg- -3' miRNA: 3'- -CACUUgCGCCCUaGGUGCaugUGCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 147034 | 0.69 | 0.897156 |
Target: 5'- cGUGAGgccgccCGCGGGGacggccccggaagucUCCGCGUgGCGCGUc -3' miRNA: 3'- -CACUU------GCGCCCU---------------AGGUGCA-UGUGCAu -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 20819 | 0.69 | 0.880547 |
Target: 5'- -gGAGCGCGgcugccgacacGGAUCCACGacccgACGCGg- -3' miRNA: 3'- caCUUGCGC-----------CCUAGGUGCa----UGUGCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 75982 | 0.69 | 0.873232 |
Target: 5'- -gGAGCGCGgccuucGGggCCGCGgccgACACGUAc -3' miRNA: 3'- caCUUGCGC------CCuaGGUGCa---UGUGCAU- -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 139966 | 0.73 | 0.689978 |
Target: 5'- -cGAACGCGGGugggacgCCcauAUGUACGCGUAu -3' miRNA: 3'- caCUUGCGCCCua-----GG---UGCAUGUGCAU- -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 64733 | 0.72 | 0.720609 |
Target: 5'- aUGAGCGCGGG-UUCGCGguuCACGg- -3' miRNA: 3'- cACUUGCGCCCuAGGUGCau-GUGCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 40567 | 0.71 | 0.788864 |
Target: 5'- cGUGAAaauggaagcgcCGCGGG-UCgGCGUGCGCGg- -3' miRNA: 3'- -CACUU-----------GCGCCCuAGgUGCAUGUGCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 38881 | 0.71 | 0.797188 |
Target: 5'- aUGGGCGgggucguUGGGAUCCAgGcUACACGUGg -3' miRNA: 3'- cACUUGC-------GCCCUAGGUgC-AUGUGCAU- -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 11318 | 0.71 | 0.816109 |
Target: 5'- gGUGGguguCGUGGGGUCCACGggGgGCGUc -3' miRNA: 3'- -CACUu---GCGCCCUAGGUGCa-UgUGCAu -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 50327 | 0.7 | 0.824854 |
Target: 5'- --uGACGCGGGAggccgccuUCCugGgGCGCGUGc -3' miRNA: 3'- cacUUGCGCCCU--------AGGugCaUGUGCAU- -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 37794 | 0.7 | 0.833418 |
Target: 5'- -gGGGCGCgGGGGUCCGCGgGCGgGg- -3' miRNA: 3'- caCUUGCG-CCCUAGGUGCaUGUgCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 102140 | 0.69 | 0.865693 |
Target: 5'- uUGAG-GCGG--UCCGCGUACACGUu -3' miRNA: 3'- cACUUgCGCCcuAGGUGCAUGUGCAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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