miRNA display CGI


Results 61 - 80 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 145992 0.68 0.764091
Target:  5'- -gGCGCcccgUCCCGCCccgcCACCCCUc-- -3'
miRNA:   3'- ggUGCGa---AGGGCGGuu--GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 95853 0.68 0.764091
Target:  5'- cCCACaGCUUCgC-CCAGC-CCCCCa-- -3'
miRNA:   3'- -GGUG-CGAAGgGcGGUUGuGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 31159 0.68 0.764091
Target:  5'- aCCACGUgaugcccCCCGaguacCCGACgGCCCCCgcgUCg -3'
miRNA:   3'- -GGUGCGaa-----GGGC-----GGUUG-UGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 74663 0.68 0.758461
Target:  5'- gCCAUGgaUgCCGCCAAgcugacggcagagcuCGCCCCCg-- -3'
miRNA:   3'- -GGUGCgaAgGGCGGUU---------------GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 79086 0.68 0.754687
Target:  5'- -gACGUccUCgCCGCCAGCGCcaccgacgaggaCCCCUUCc -3'
miRNA:   3'- ggUGCGa-AG-GGCGGUUGUG------------GGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 87417 0.68 0.754687
Target:  5'- -gGCGCcUCCCccCCGGCGCCCCUa-- -3'
miRNA:   3'- ggUGCGaAGGGc-GGUUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 34829 0.68 0.745178
Target:  5'- uCCGCgGCcccUCCCGgCAgccACGCCCCCa-- -3'
miRNA:   3'- -GGUG-CGa--AGGGCgGU---UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 30202 0.68 0.735573
Target:  5'- gCCGCGUcgggaCCCGC--GCGCCCCCg-- -3'
miRNA:   3'- -GGUGCGaa---GGGCGguUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 47544 0.68 0.735573
Target:  5'- cCUACGCUUCCgGCCAcccgcgACGgCCUCg-- -3'
miRNA:   3'- -GGUGCGAAGGgCGGU------UGUgGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 23245 0.68 0.735573
Target:  5'- aCGCGCUggcggCCGCCGcCGCCUCCg-- -3'
miRNA:   3'- gGUGCGAag---GGCGGUuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 29761 0.68 0.735573
Target:  5'- gCC-CGCccCCCGCCgGACGCCCCg--- -3'
miRNA:   3'- -GGuGCGaaGGGCGG-UUGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 115785 0.68 0.735573
Target:  5'- cCCACGCgucuucugUUUCCGCaAGCcccuagccccGCCCCCUUUg -3'
miRNA:   3'- -GGUGCG--------AAGGGCGgUUG----------UGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 116332 0.68 0.735573
Target:  5'- cCCACGCgaaUCgUCGCCu--GCCCCCUg- -3'
miRNA:   3'- -GGUGCGa--AG-GGCGGuugUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 45929 0.68 0.72588
Target:  5'- uCCGC-CUgacaccUCCCGCCGugGCgCCCUa- -3'
miRNA:   3'- -GGUGcGA------AGGGCGGUugUGgGGGAag -5'
5594 5' -57.6 NC_001806.1 + 79681 0.68 0.72588
Target:  5'- gCGCGCgccgacaCCGCCGggcACGCUCCCUg- -3'
miRNA:   3'- gGUGCGaag----GGCGGU---UGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 83204 0.68 0.72588
Target:  5'- gUACGCUcgacgaggacgUCgCCGCCGACguggucaccGCCCCCUc- -3'
miRNA:   3'- gGUGCGA-----------AG-GGCGGUUG---------UGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 118582 0.68 0.724907
Target:  5'- cCCACGCccUUCCCGCgGACucgggggACCCgCaUCg -3'
miRNA:   3'- -GGUGCG--AAGGGCGgUUG-------UGGGgGaAG- -5'
5594 5' -57.6 NC_001806.1 + 29835 0.69 0.720027
Target:  5'- cUCACGCagCCCcccaGCCGgccgcggcucggacaGCGCCCCCcUCg -3'
miRNA:   3'- -GGUGCGaaGGG----CGGU---------------UGUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 79577 0.69 0.720027
Target:  5'- cCgGCGCUUgCCGuccccccaaaguuccCCGGCGCCCCCc-- -3'
miRNA:   3'- -GgUGCGAAgGGC---------------GGUUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 92665 0.69 0.716109
Target:  5'- aCCA-GCUUCCCGCCcg-GCUCCUgUCg -3'
miRNA:   3'- -GGUgCGAAGGGCGGuugUGGGGGaAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.