miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 106131 0.67 0.809227
Target:  5'- -aACGCgagCCUGCC--CGCCCCCa-- -3'
miRNA:   3'- ggUGCGaa-GGGCGGuuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 1913 0.67 0.808359
Target:  5'- aCACGCggCCCgagGCCAGCACCgugcggcgcagguCCCg-- -3'
miRNA:   3'- gGUGCGaaGGG---CGGUUGUGG-------------GGGaag -5'
5594 5' -57.6 NC_001806.1 + 5901 0.67 0.800479
Target:  5'- cCCAaggGCcgCCCGCCuugcCGCCCCCc-- -3'
miRNA:   3'- -GGUg--CGaaGGGCGGuu--GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 152046 0.67 0.800479
Target:  5'- gCACGCcgCCCGgaCCGcCGCCCgCCUUUu -3'
miRNA:   3'- gGUGCGaaGGGC--GGUuGUGGG-GGAAG- -5'
5594 5' -57.6 NC_001806.1 + 59277 0.67 0.800479
Target:  5'- gCCGCGCUagCCUGauuaaauACGCCCCCa-- -3'
miRNA:   3'- -GGUGCGAa-GGGCggu----UGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 336 0.67 0.800479
Target:  5'- gCACGCcgCCCGgaCCGcCGCCCgCCUUUu -3'
miRNA:   3'- gGUGCGaaGGGC--GGUuGUGGG-GGAAG- -5'
5594 5' -57.6 NC_001806.1 + 80186 0.67 0.800479
Target:  5'- cCCGCGgUccaaCCCGUCGcccCGCCCCCgacgUCa -3'
miRNA:   3'- -GGUGCgAa---GGGCGGUu--GUGGGGGa---AG- -5'
5594 5' -57.6 NC_001806.1 + 91675 0.67 0.791583
Target:  5'- gCGCGCcaUCCaaaguuCGCCAGCGCCgCCCg-- -3'
miRNA:   3'- gGUGCGa-AGG------GCGGUUGUGG-GGGaag -5'
5594 5' -57.6 NC_001806.1 + 127957 0.67 0.791583
Target:  5'- gCgACGCggacUCCCGUCugaGCCCCCg-- -3'
miRNA:   3'- -GgUGCGa---AGGGCGGuugUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 72739 0.67 0.791583
Target:  5'- cCCACGgaUCCCcccuccGCCGAC-CCaCCCUcCg -3'
miRNA:   3'- -GGUGCgaAGGG------CGGUUGuGG-GGGAaG- -5'
5594 5' -57.6 NC_001806.1 + 4205 0.67 0.782547
Target:  5'- gCCACgGCUcCCCGCUGACGuaCCCgUCg -3'
miRNA:   3'- -GGUG-CGAaGGGCGGUUGUggGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 62702 0.67 0.782547
Target:  5'- -gGCGCUUCCCGCUAAacgugcguucCAgUUCCUUUa -3'
miRNA:   3'- ggUGCGAAGGGCGGUU----------GUgGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 123898 0.67 0.782547
Target:  5'- gCCGCGCgUCCC-CCGAgACgCCCg-- -3'
miRNA:   3'- -GGUGCGaAGGGcGGUUgUGgGGGaag -5'
5594 5' -57.6 NC_001806.1 + 145197 0.67 0.782547
Target:  5'- gCCGCGUUUCCagGUagguuaGACACCUgCUUCu -3'
miRNA:   3'- -GGUGCGAAGGg-CGg-----UUGUGGGgGAAG- -5'
5594 5' -57.6 NC_001806.1 + 89092 0.68 0.777062
Target:  5'- gCGCGCUUCuCCGggggggcauccucguCCAGCACCCgCg-- -3'
miRNA:   3'- gGUGCGAAG-GGC---------------GGUUGUGGGgGaag -5'
5594 5' -57.6 NC_001806.1 + 20751 0.68 0.77338
Target:  5'- uCCGCuGCUccuccuUCCCGCCG--GCCCCUg-- -3'
miRNA:   3'- -GGUG-CGA------AGGGCGGUugUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 128345 0.68 0.77338
Target:  5'- -gACGCagauacgUCCCGCuCAGgACCCCCc-- -3'
miRNA:   3'- ggUGCGa------AGGGCG-GUUgUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 71372 0.68 0.77338
Target:  5'- aCCGCGagggggcgCCUcauuCCAACACCCCCgUCg -3'
miRNA:   3'- -GGUGCgaa-----GGGc---GGUUGUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 26394 0.68 0.77338
Target:  5'- gCCAuCGCggCCC-CCGcCGCCCCCg-- -3'
miRNA:   3'- -GGU-GCGaaGGGcGGUuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 47292 0.68 0.77338
Target:  5'- cCCAUGCccgUCCCccCCGcCGCCCUCUUUa -3'
miRNA:   3'- -GGUGCGa--AGGGc-GGUuGUGGGGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.