miRNA display CGI


Results 41 - 60 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 10648 0.71 0.589816
Target:  5'- gCCGCGCgcUCCUGCCAcACgaaguccguucguagACCCCCggUCg -3'
miRNA:   3'- -GGUGCGa-AGGGCGGU-UG---------------UGGGGGa-AG- -5'
5594 5' -57.6 NC_001806.1 + 143158 0.71 0.595838
Target:  5'- aCUugGUUUCCCGCCccCcCCCCCc-- -3'
miRNA:   3'- -GGugCGAAGGGCGGuuGuGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 17856 0.71 0.595838
Target:  5'- cCC-CGCggCCC-CCAAcCACCCCCUg- -3'
miRNA:   3'- -GGuGCGaaGGGcGGUU-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 23715 0.71 0.595838
Target:  5'- gCCGCGCggUgCGCCGGgccCGCCCCCg-- -3'
miRNA:   3'- -GGUGCGaaGgGCGGUU---GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 79305 0.71 0.605895
Target:  5'- cCCACGCUauUCaCCGaCGcCACCCCCggCg -3'
miRNA:   3'- -GGUGCGA--AG-GGCgGUuGUGGGGGaaG- -5'
5594 5' -57.6 NC_001806.1 + 24735 0.7 0.615972
Target:  5'- cCCGCGCccugcuggagCCCGacgaCGACGCCCCCc-- -3'
miRNA:   3'- -GGUGCGaa--------GGGCg---GUUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 22887 0.7 0.615972
Target:  5'- gCugGCcggggcccggCCCGCCAGC-CCCCCg-- -3'
miRNA:   3'- gGugCGaa--------GGGCGGUUGuGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 113428 0.7 0.615972
Target:  5'- gCCACGCcauggccCCCGCCAccauCGCCgCCgUUCg -3'
miRNA:   3'- -GGUGCGaa-----GGGCGGUu---GUGG-GGgAAG- -5'
5594 5' -57.6 NC_001806.1 + 123814 0.7 0.636153
Target:  5'- cCCACGggUCCCGCCAccgAUccgGCCUCCg-- -3'
miRNA:   3'- -GGUGCgaAGGGCGGU---UG---UGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 21921 0.7 0.636153
Target:  5'- cCCGCGCggcgguggCCgGCCGcgACGCCacgggCCCUUCa -3'
miRNA:   3'- -GGUGCGaa------GGgCGGU--UGUGG-----GGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 142881 0.7 0.636153
Target:  5'- cCCGCGCUUUUCGUUGguuuauAUACCCCCUc- -3'
miRNA:   3'- -GGUGCGAAGGGCGGU------UGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 85286 0.7 0.646243
Target:  5'- gUugGCcgaCCGCCAcaACGCCCCCcUCc -3'
miRNA:   3'- gGugCGaagGGCGGU--UGUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 109382 0.7 0.646243
Target:  5'- cCCGCGCccCCCGaCCc-CGCCCCCg-- -3'
miRNA:   3'- -GGUGCGaaGGGC-GGuuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 140694 0.7 0.646243
Target:  5'- cCCGCGUg-CCgCGCUggAACGCCCCCgUCu -3'
miRNA:   3'- -GGUGCGaaGG-GCGG--UUGUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 56890 0.7 0.647251
Target:  5'- gCGCGCUgccuccgaucgucagCCCGCCGACgaccAUCCCCa-- -3'
miRNA:   3'- gGUGCGAa--------------GGGCGGUUG----UGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 49344 0.7 0.656321
Target:  5'- cCCAuCGCcgagcgUCCCGgCAGCGCCCCg--- -3'
miRNA:   3'- -GGU-GCGa-----AGGGCgGUUGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 43335 0.7 0.660348
Target:  5'- aCGCGCUacuUCCCGCCcccaucacgcucgauGACGCCCUg--- -3'
miRNA:   3'- gGUGCGA---AGGGCGG---------------UUGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 1342 0.69 0.666382
Target:  5'- -gGCGUggccaagCCCGCCucCGCCCCCa-- -3'
miRNA:   3'- ggUGCGaa-----GGGCGGuuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 3686 0.69 0.676415
Target:  5'- cCCGCGgccCCCGUCAGCGCCgCgUUCu -3'
miRNA:   3'- -GGUGCgaaGGGCGGUUGUGGgGgAAG- -5'
5594 5' -57.6 NC_001806.1 + 4106 0.69 0.676415
Target:  5'- gUCGCGCcUCcuCCGCCucggGCGCCCCCc-- -3'
miRNA:   3'- -GGUGCGaAG--GGCGGu---UGUGGGGGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.