miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 1012 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 945 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 911 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 877 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 843 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccuCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuu-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 979 0.72 0.507233
Target:  5'- cCCuCGCccccUCCCGCCccCGCCCCCUc- -3'
miRNA:   3'- -GGuGCGa---AGGGCGGuuGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 107474 0.72 0.516839
Target:  5'- aCCGCGCUggCCCggGCCGACcaccagaaaACCCUCUUUu -3'
miRNA:   3'- -GGUGCGAa-GGG--CGGUUG---------UGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 150678 0.72 0.516839
Target:  5'- gCCGCGCUggcggCCGCCGAUggccagucccGCCCCCg-- -3'
miRNA:   3'- -GGUGCGAag---GGCGGUUG----------UGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 29791 0.72 0.516839
Target:  5'- cCCACGCagaggCgCCGCC-GCGCCCCCc-- -3'
miRNA:   3'- -GGUGCGaa---G-GGCGGuUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 43145 0.72 0.516839
Target:  5'- cCCGCGgUUCCCGUCuucCugCCCCa-- -3'
miRNA:   3'- -GGUGCgAAGGGCGGuu-GugGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 78563 0.72 0.516839
Target:  5'- cCCcCGCUcCCC-CCAACGCCCUCUa- -3'
miRNA:   3'- -GGuGCGAaGGGcGGUUGUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 66267 0.72 0.533331
Target:  5'- cUCACGCgcaugCCCGCCAcucgccggggcgccACACCaCgCCUUCc -3'
miRNA:   3'- -GGUGCGaa---GGGCGGU--------------UGUGG-G-GGAAG- -5'
5594 5' -57.6 NC_001806.1 + 26504 0.72 0.546069
Target:  5'- cCCGCgGCcgcCCCGCCGcCGCCCCCc-- -3'
miRNA:   3'- -GGUG-CGaa-GGGCGGUuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 69104 0.72 0.546069
Target:  5'- cCCGCGCUcggCCUGU--GCGCCCCCg-- -3'
miRNA:   3'- -GGUGCGAa--GGGCGguUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 87307 0.72 0.546069
Target:  5'- cCCGCGCgcccuccggcUCCCGCU--CGCCCCCg-- -3'
miRNA:   3'- -GGUGCGa---------AGGGCGGuuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 23475 0.71 0.555933
Target:  5'- gCCGCgGCgcaggCCCGCCcGCGCCCCgUg- -3'
miRNA:   3'- -GGUG-CGaa---GGGCGGuUGUGGGGgAag -5'
5594 5' -57.6 NC_001806.1 + 123010 0.71 0.555933
Target:  5'- cCCAUGgUgaggCCCGCCGACGCCUCg--- -3'
miRNA:   3'- -GGUGCgAa---GGGCGGUUGUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 143958 0.71 0.555933
Target:  5'- cCCACGCc-CCCGCCc-CugCCCCggCg -3'
miRNA:   3'- -GGUGCGaaGGGCGGuuGugGGGGaaG- -5'
5594 5' -57.6 NC_001806.1 + 44682 0.71 0.575808
Target:  5'- gUCACGCUUggggCCC-CgAGCGCCCCCUcCa -3'
miRNA:   3'- -GGUGCGAA----GGGcGgUUGUGGGGGAaG- -5'
5594 5' -57.6 NC_001806.1 + 123240 0.71 0.585806
Target:  5'- cCCACGCggCCCugcGCCGACGCCUggCCg-- -3'
miRNA:   3'- -GGUGCGaaGGG---CGGUUGUGGG--GGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.