miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 10648 0.71 0.589816
Target:  5'- gCCGCGCgcUCCUGCCAcACgaaguccguucguagACCCCCggUCg -3'
miRNA:   3'- -GGUGCGa-AGGGCGGU-UG---------------UGGGGGa-AG- -5'
5594 5' -57.6 NC_001806.1 + 17856 0.71 0.595838
Target:  5'- cCC-CGCggCCC-CCAAcCACCCCCUg- -3'
miRNA:   3'- -GGuGCGaaGGGcGGUU-GUGGGGGAag -5'
5594 5' -57.6 NC_001806.1 + 19658 0.66 0.865669
Target:  5'- uCCACGCaacggUCgCCGCCGGuCGCCUCg--- -3'
miRNA:   3'- -GGUGCGa----AG-GGCGGUU-GUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 19744 0.66 0.865669
Target:  5'- cCCGCGUcccCCCuCCucCGCCCCCgcgUCc -3'
miRNA:   3'- -GGUGCGaa-GGGcGGuuGUGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 19788 0.66 0.865669
Target:  5'- cCCGCGUcccCCCuCCucCGCCCCCgcgUCc -3'
miRNA:   3'- -GGUGCGaa-GGGcGGuuGUGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 20157 0.66 0.834502
Target:  5'- aCC-CGCccCCCGCCGcccgggccCGCCCCCg-- -3'
miRNA:   3'- -GGuGCGaaGGGCGGUu-------GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 20751 0.68 0.77338
Target:  5'- uCCGCuGCUccuccuUCCCGCCG--GCCCCUg-- -3'
miRNA:   3'- -GGUG-CGA------AGGGCGGUugUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 21921 0.7 0.636153
Target:  5'- cCCGCGCggcgguggCCgGCCGcgACGCCacgggCCCUUCa -3'
miRNA:   3'- -GGUGCGaa------GGgCGGU--UGUGG-----GGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 22887 0.7 0.615972
Target:  5'- gCugGCcggggcccggCCCGCCAGC-CCCCCg-- -3'
miRNA:   3'- gGugCGaa--------GGGCGGUUGuGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 22937 0.73 0.450451
Target:  5'- gCCcCGCUUCCCcgccgcgccgcacGCCGACGCgCCCCg-- -3'
miRNA:   3'- -GGuGCGAAGGG-------------CGGUUGUG-GGGGaag -5'
5594 5' -57.6 NC_001806.1 + 23245 0.68 0.735573
Target:  5'- aCGCGCUggcggCCGCCGcCGCCUCCg-- -3'
miRNA:   3'- gGUGCGAag---GGCGGUuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 23389 0.73 0.451354
Target:  5'- cCCGCGCcccccUCCCcgcGCCcGCGCCCCCcUCc -3'
miRNA:   3'- -GGUGCGa----AGGG---CGGuUGUGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 23421 0.66 0.85047
Target:  5'- nCCACGCc-CCCGgggcCCGAgccCGCCCCCg-- -3'
miRNA:   3'- -GGUGCGaaGGGC----GGUU---GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 23475 0.71 0.555933
Target:  5'- gCCGCgGCgcaggCCCGCCcGCGCCCCgUg- -3'
miRNA:   3'- -GGUG-CGaa---GGGCGGuUGUGGGGgAag -5'
5594 5' -57.6 NC_001806.1 + 23510 0.72 0.497704
Target:  5'- gUCGCGCcggCCCGCCGAgGgCCCCg-- -3'
miRNA:   3'- -GGUGCGaa-GGGCGGUUgUgGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 23715 0.71 0.595838
Target:  5'- gCCGCGCggUgCGCCGGgccCGCCCCCg-- -3'
miRNA:   3'- -GGUGCGaaGgGCGGUU---GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 24210 0.67 0.817819
Target:  5'- cCUGCGaCUggCCCGCCGACggGCCCgCggugUCg -3'
miRNA:   3'- -GGUGC-GAa-GGGCGGUUG--UGGGgGa---AG- -5'
5594 5' -57.6 NC_001806.1 + 24735 0.7 0.615972
Target:  5'- cCCGCGCccugcuggagCCCGacgaCGACGCCCCCc-- -3'
miRNA:   3'- -GGUGCGaa--------GGGCg---GUUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 26394 0.68 0.77338
Target:  5'- gCCAuCGCggCCC-CCGcCGCCCCCg-- -3'
miRNA:   3'- -GGU-GCGaaGGGcGGUuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 26504 0.72 0.546069
Target:  5'- cCCGCgGCcgcCCCGCCGcCGCCCCCc-- -3'
miRNA:   3'- -GGUG-CGaa-GGGCGGUuGUGGGGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.