miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5594 5' -57.6 NC_001806.1 + 19658 0.66 0.865669
Target:  5'- uCCACGCaacggUCgCCGCCGGuCGCCUCg--- -3'
miRNA:   3'- -GGUGCGa----AG-GGCGGUU-GUGGGGgaag -5'
5594 5' -57.6 NC_001806.1 + 72240 0.66 0.858169
Target:  5'- gCACGgcCUUCCgGagGGCACCCCCg-- -3'
miRNA:   3'- gGUGC--GAAGGgCggUUGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 152003 0.66 0.858169
Target:  5'- cCCcCGC-UCCCGCgGcccCGCCCCCc-- -3'
miRNA:   3'- -GGuGCGaAGGGCGgUu--GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 19744 0.66 0.865669
Target:  5'- cCCGCGUcccCCCuCCucCGCCCCCgcgUCc -3'
miRNA:   3'- -GGUGCGaa-GGGcGGuuGUGGGGGa--AG- -5'
5594 5' -57.6 NC_001806.1 + 102972 0.66 0.842579
Target:  5'- cCCGuCGCccccaCCCGCCGGCucAUCCCCg-- -3'
miRNA:   3'- -GGU-GCGaa---GGGCGGUUG--UGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 136434 0.66 0.842579
Target:  5'- -aACGCccucagacCCUGCgucACACCCCCUUCu -3'
miRNA:   3'- ggUGCGaa------GGGCGgu-UGUGGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 23421 0.66 0.85047
Target:  5'- nCCACGCc-CCCGgggcCCGAgccCGCCCCCg-- -3'
miRNA:   3'- -GGUGCGaaGGGC----GGUU---GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 126708 0.67 0.817819
Target:  5'- gCCGCGag-CCCGUCuucGCgaACCCCCgUCa -3'
miRNA:   3'- -GGUGCgaaGGGCGGu--UG--UGGGGGaAG- -5'
5594 5' -57.6 NC_001806.1 + 336 0.67 0.800479
Target:  5'- gCACGCcgCCCGgaCCGcCGCCCgCCUUUu -3'
miRNA:   3'- gGUGCGaaGGGC--GGUuGUGGG-GGAAG- -5'
5594 5' -57.6 NC_001806.1 + 62702 0.67 0.782547
Target:  5'- -gGCGCUUCCCGCUAAacgugcguucCAgUUCCUUUa -3'
miRNA:   3'- ggUGCGAAGGGCGGUU----------GUgGGGGAAG- -5'
5594 5' -57.6 NC_001806.1 + 80186 0.67 0.800479
Target:  5'- cCCGCGgUccaaCCCGUCGcccCGCCCCCgacgUCa -3'
miRNA:   3'- -GGUGCgAa---GGGCGGUu--GUGGGGGa---AG- -5'
5594 5' -57.6 NC_001806.1 + 72739 0.67 0.791583
Target:  5'- cCCACGgaUCCCcccuccGCCGAC-CCaCCCUcCg -3'
miRNA:   3'- -GGUGCgaAGGG------CGGUUGuGG-GGGAaG- -5'
5594 5' -57.6 NC_001806.1 + 152046 0.67 0.800479
Target:  5'- gCACGCcgCCCGgaCCGcCGCCCgCCUUUu -3'
miRNA:   3'- gGUGCGaaGGGC--GGUuGUGGG-GGAAG- -5'
5594 5' -57.6 NC_001806.1 + 91675 0.67 0.791583
Target:  5'- gCGCGCcaUCCaaaguuCGCCAGCGCCgCCCg-- -3'
miRNA:   3'- gGUGCGa-AGG------GCGGUUGUGG-GGGaag -5'
5594 5' -57.6 NC_001806.1 + 106131 0.67 0.809227
Target:  5'- -aACGCgagCCUGCC--CGCCCCCa-- -3'
miRNA:   3'- ggUGCGaa-GGGCGGuuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 1913 0.67 0.808359
Target:  5'- aCACGCggCCCgagGCCAGCACCgugcggcgcagguCCCg-- -3'
miRNA:   3'- gGUGCGaaGGG---CGGUUGUGG-------------GGGaag -5'
5594 5' -57.6 NC_001806.1 + 5901 0.67 0.800479
Target:  5'- cCCAaggGCcgCCCGCCuugcCGCCCCCc-- -3'
miRNA:   3'- -GGUg--CGaaGGGCGGuu--GUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 47179 0.67 0.809227
Target:  5'- aCgGCGCU--UCGCCAcCGCCCCCc-- -3'
miRNA:   3'- -GgUGCGAagGGCGGUuGUGGGGGaag -5'
5594 5' -57.6 NC_001806.1 + 137823 0.67 0.809227
Target:  5'- gUACGCggCCCGCCuGCGgCCCgUg- -3'
miRNA:   3'- gGUGCGaaGGGCGGuUGUgGGGgAag -5'
5594 5' -57.6 NC_001806.1 + 75268 0.67 0.809227
Target:  5'- -gGCGCgg-CCGCCAGCGacccggccucCCCCCUg- -3'
miRNA:   3'- ggUGCGaagGGCGGUUGU----------GGGGGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.