miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5599 3' -55.1 NC_001806.1 + 62920 0.66 0.943054
Target:  5'- aCUCGcccuCGuACCGCGGCCGG-GCGu -3'
miRNA:   3'- -GAGUacauGC-UGGUGCCGGUCuCGCu -5'
5599 3' -55.1 NC_001806.1 + 140878 0.66 0.943054
Target:  5'- gUCAcGUAgGGCCcguCGGUaCAGGGCGGg -3'
miRNA:   3'- gAGUaCAUgCUGGu--GCCG-GUCUCGCU- -5'
5599 3' -55.1 NC_001806.1 + 79471 0.66 0.943054
Target:  5'- --aGUGUGC-ACCGCGGCCcccuGGGCc- -3'
miRNA:   3'- gagUACAUGcUGGUGCCGGu---CUCGcu -5'
5599 3' -55.1 NC_001806.1 + 42670 0.66 0.943054
Target:  5'- ---uUGUugAUGGCCACGGUgAGAGCc- -3'
miRNA:   3'- gaguACA--UGCUGGUGCCGgUCUCGcu -5'
5599 3' -55.1 NC_001806.1 + 97925 0.66 0.928307
Target:  5'- -aUAUGUugGGCCGCGuuGCCAucGCGu -3'
miRNA:   3'- gaGUACAugCUGGUGC--CGGUcuCGCu -5'
5599 3' -55.1 NC_001806.1 + 2489 0.66 0.921245
Target:  5'- gUCGUcGUcgccgccgccgcacGCGGCCuggGCGGCgGGGGCGGg -3'
miRNA:   3'- gAGUA-CA--------------UGCUGG---UGCCGgUCUCGCU- -5'
5599 3' -55.1 NC_001806.1 + 3778 0.66 0.917274
Target:  5'- gUCGUaucgGCGGCuCAUGGCCAcGGCGGc -3'
miRNA:   3'- gAGUAca--UGCUG-GUGCCGGUcUCGCU- -5'
5599 3' -55.1 NC_001806.1 + 150592 0.67 0.911397
Target:  5'- --aGUGgGCGGCC-CGGCCcauuGGGCGGu -3'
miRNA:   3'- gagUACaUGCUGGuGCCGGu---CUCGCU- -5'
5599 3' -55.1 NC_001806.1 + 41456 0.67 0.905282
Target:  5'- gCUUcgGcggacACGACCGCuucGGCCAG-GCGAg -3'
miRNA:   3'- -GAGuaCa----UGCUGGUG---CCGGUCuCGCU- -5'
5599 3' -55.1 NC_001806.1 + 106309 0.67 0.892346
Target:  5'- -aCGUG-GCGACgGCGaGCCAcccGAGCGGg -3'
miRNA:   3'- gaGUACaUGCUGgUGC-CGGU---CUCGCU- -5'
5599 3' -55.1 NC_001806.1 + 136387 0.67 0.892346
Target:  5'- cCUCc---GCGACCGUGGCCAGcuGGCGGg -3'
miRNA:   3'- -GAGuacaUGCUGGUGCCGGUC--UCGCU- -5'
5599 3' -55.1 NC_001806.1 + 146553 0.68 0.878491
Target:  5'- gCUgGUGUAgUGGgCGCGGCCAGAGa-- -3'
miRNA:   3'- -GAgUACAU-GCUgGUGCCGGUCUCgcu -5'
5599 3' -55.1 NC_001806.1 + 50598 0.68 0.878491
Target:  5'- --gGUGUACGcgcuGCaCACGGCCcuGGCGAc -3'
miRNA:   3'- gagUACAUGC----UG-GUGCCGGucUCGCU- -5'
5599 3' -55.1 NC_001806.1 + 3298 0.68 0.871229
Target:  5'- gUCGgcGUGCGGCgGCGGCgGGgaAGCGGg -3'
miRNA:   3'- gAGUa-CAUGCUGgUGCCGgUC--UCGCU- -5'
5599 3' -55.1 NC_001806.1 + 3621 0.68 0.863752
Target:  5'- gCUCGcccgGUGCGGCgGCGGCgAcGGCGGc -3'
miRNA:   3'- -GAGUa---CAUGCUGgUGCCGgUcUCGCU- -5'
5599 3' -55.1 NC_001806.1 + 115332 0.68 0.863752
Target:  5'- ------cGCGGCCACGGCCAacccguGGGCGu -3'
miRNA:   3'- gaguacaUGCUGGUGCCGGU------CUCGCu -5'
5599 3' -55.1 NC_001806.1 + 53858 0.68 0.848172
Target:  5'- ----cGUGCGACgGCGGCCAGcuguuuGGCa- -3'
miRNA:   3'- gaguaCAUGCUGgUGCCGGUC------UCGcu -5'
5599 3' -55.1 NC_001806.1 + 78249 0.68 0.840083
Target:  5'- cCUCAUGUuCGGCaCGCGGCUGGcagacuGGCGc -3'
miRNA:   3'- -GAGUACAuGCUG-GUGCCGGUC------UCGCu -5'
5599 3' -55.1 NC_001806.1 + 30632 0.69 0.831803
Target:  5'- aCUCAgGgccggGgGGgCGCGGCCAGGGUGGg -3'
miRNA:   3'- -GAGUaCa----UgCUgGUGCCGGUCUCGCU- -5'
5599 3' -55.1 NC_001806.1 + 56638 0.69 0.831803
Target:  5'- -gCcgGUGCGACCucauCGGCCGGcGGCc- -3'
miRNA:   3'- gaGuaCAUGCUGGu---GCCGGUC-UCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.