miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5599 5' -60.4 NC_001806.1 + 122542 0.67 0.686382
Target:  5'- ---gGUGGCCACGuCCAccuugGCCCGUuuuuuGGGg -3'
miRNA:   3'- gaagCGCCGGUGCcGGU-----UGGGCA-----CCC- -5'
5599 5' -60.4 NC_001806.1 + 136381 0.67 0.686382
Target:  5'- --cCGCGGCCuccgcgaccgUGGCCAGCUgGcGGGu -3'
miRNA:   3'- gaaGCGCCGGu---------GCCGGUUGGgCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 26252 0.67 0.676644
Target:  5'- ---gGUGGCgGCGGgCAGCCCG-GGc -3'
miRNA:   3'- gaagCGCCGgUGCCgGUUGGGCaCCc -5'
5599 5' -60.4 NC_001806.1 + 33153 0.67 0.676644
Target:  5'- -cUCGUcccgGGCCguacGCGGCCuucgcCCCGUGaGGg -3'
miRNA:   3'- gaAGCG----CCGG----UGCCGGuu---GGGCAC-CC- -5'
5599 5' -60.4 NC_001806.1 + 9166 0.67 0.666872
Target:  5'- -aUCGgGGagacaACGGCCGuguaGCCCG-GGGg -3'
miRNA:   3'- gaAGCgCCgg---UGCCGGU----UGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 36210 0.67 0.666872
Target:  5'- --gCGCGG--GCGGCCAugCCGcUGGa -3'
miRNA:   3'- gaaGCGCCggUGCCGGUugGGC-ACCc -5'
5599 5' -60.4 NC_001806.1 + 89565 0.68 0.657073
Target:  5'- aUUCGCgucGGCC-CGGCCGGCCgGgcuuaUGGa -3'
miRNA:   3'- gAAGCG---CCGGuGCCGGUUGGgC-----ACCc -5'
5599 5' -60.4 NC_001806.1 + 24781 0.68 0.657073
Target:  5'- --gCGCGGCgACGacgaCGGCCCG-GGGg -3'
miRNA:   3'- gaaGCGCCGgUGCcg--GUUGGGCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 51679 0.68 0.657073
Target:  5'- ---aGCGGCCugGacguccCCGAggacCCCGUGGGc -3'
miRNA:   3'- gaagCGCCGGugCc-----GGUU----GGGCACCC- -5'
5599 5' -60.4 NC_001806.1 + 26968 0.68 0.647257
Target:  5'- -cUgGCGcGCCGCGGCUcgugGGCCCGcgagcGGGc -3'
miRNA:   3'- gaAgCGC-CGGUGCCGG----UUGGGCa----CCC- -5'
5599 5' -60.4 NC_001806.1 + 112363 0.68 0.647257
Target:  5'- -cUCGUGGaccucaCCACGGCCAcgcaGCCCuccGUGGc -3'
miRNA:   3'- gaAGCGCC------GGUGCCGGU----UGGG---CACCc -5'
5599 5' -60.4 NC_001806.1 + 66809 0.68 0.647257
Target:  5'- -aUCaCGGCCGagcggGGCCGGCCCG-GGu -3'
miRNA:   3'- gaAGcGCCGGUg----CCGGUUGGGCaCCc -5'
5599 5' -60.4 NC_001806.1 + 20341 0.68 0.647257
Target:  5'- ---gGCGGCaagGCGGgCGGCCCuUGGGc -3'
miRNA:   3'- gaagCGCCGg--UGCCgGUUGGGcACCC- -5'
5599 5' -60.4 NC_001806.1 + 136986 0.68 0.647257
Target:  5'- --gUGCGGUCAUGGCggCGGCCgGcGGGg -3'
miRNA:   3'- gaaGCGCCGGUGCCG--GUUGGgCaCCC- -5'
5599 5' -60.4 NC_001806.1 + 144530 0.68 0.637429
Target:  5'- --gCGgGGgCGCGGCCGugCCGaucgcGGGu -3'
miRNA:   3'- gaaGCgCCgGUGCCGGUugGGCa----CCC- -5'
5599 5' -60.4 NC_001806.1 + 124829 0.68 0.637429
Target:  5'- -gUCGCcccgaGCCugGGCguACCCGUGa- -3'
miRNA:   3'- gaAGCGc----CGGugCCGguUGGGCACcc -5'
5599 5' -60.4 NC_001806.1 + 147814 0.68 0.637429
Target:  5'- --aUGgGcGCCGCGGggGGCCUGUGGGg -3'
miRNA:   3'- gaaGCgC-CGGUGCCggUUGGGCACCC- -5'
5599 5' -60.4 NC_001806.1 + 31273 0.68 0.637429
Target:  5'- aCUUcCGCaGCCuGCGGUCucggcACCCGUGGu -3'
miRNA:   3'- -GAA-GCGcCGG-UGCCGGu----UGGGCACCc -5'
5599 5' -60.4 NC_001806.1 + 4398 0.68 0.637429
Target:  5'- --cCGgGGCUugGGCgCGGCCuCGgagagGGGg -3'
miRNA:   3'- gaaGCgCCGGugCCG-GUUGG-GCa----CCC- -5'
5599 5' -60.4 NC_001806.1 + 3841 0.68 0.637429
Target:  5'- ---gGCcGCCAUGGCgUAGCCCagGUGGGg -3'
miRNA:   3'- gaagCGcCGGUGCCG-GUUGGG--CACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.