miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 57401 0.66 0.971266
Target:  5'- gAGCAucccgcgccuUGGCCguGAugGCACG-CGGgGUg -3'
miRNA:   3'- gUUGU----------ACCGG--CUugCGUGUuGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 94746 0.67 0.936288
Target:  5'- -cGCcgGGCuguCGGACGC-CGACcGCGCg -3'
miRNA:   3'- guUGuaCCG---GCUUGCGuGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 138791 0.67 0.936288
Target:  5'- ---aAUGGCCGAcgcagGCGCcccCGGCGaGCGUg -3'
miRNA:   3'- guugUACCGGCU-----UGCGu--GUUGC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 132740 0.67 0.941117
Target:  5'- cCGGCGUGGCCucggcggcagccGGAUGCcuccuGCccGCGGUGCg -3'
miRNA:   3'- -GUUGUACCGG------------CUUGCG-----UGu-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 148134 0.67 0.945703
Target:  5'- -uGCGUGagacGCCccgcccgucacgGGGgGCGCGGCGGCGCc -3'
miRNA:   3'- guUGUAC----CGG------------CUUgCGUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 113676 0.67 0.945703
Target:  5'- -uGCAUGGCCGuguAC-CGgGACcugguGGCGCa -3'
miRNA:   3'- guUGUACCGGCu--UGcGUgUUG-----CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 128288 0.67 0.945703
Target:  5'- gAGCcgGGCCGAcgACGCGaugauggguCGGgGCc -3'
miRNA:   3'- gUUGuaCCGGCU--UGCGUguu------GCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 66382 0.67 0.950047
Target:  5'- gGGCAUcauGCCGAGCucuGCAaagGCGGCGUa -3'
miRNA:   3'- gUUGUAc--CGGCUUG---CGUgu-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 80016 0.67 0.945703
Target:  5'- --cCGUaGG-CGGGC-CGCAGCGGCGCc -3'
miRNA:   3'- guuGUA-CCgGCUUGcGUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 11382 0.67 0.939694
Target:  5'- uCGGCgAUGGCCGucagggagggcauuGGCGUGCGugacgacCGGCGCc -3'
miRNA:   3'- -GUUG-UACCGGC--------------UUGCGUGUu------GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 4426 0.67 0.941117
Target:  5'- gGGgGUGGcCCGGGCG-GgGGCGGCGUc -3'
miRNA:   3'- gUUgUACC-GGCUUGCgUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 13148 0.67 0.949624
Target:  5'- aGGCA-GGCUGAcggggggAUGCGCAGCgggagGGCGUa -3'
miRNA:   3'- gUUGUaCCGGCU-------UGCGUGUUG-----CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 10028 0.67 0.941117
Target:  5'- gAGCcucGGCCGAACaGCGCggUGGgGg -3'
miRNA:   3'- gUUGua-CCGGCUUG-CGUGuuGCCgCg -5'
5602 3' -53.6 NC_001806.1 + 1951 0.67 0.945703
Target:  5'- -cGCGccGCCGGccaGCGC-ACGGCGCa -3'
miRNA:   3'- guUGUacCGGCUug-CGUGuUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 50039 0.67 0.940645
Target:  5'- aCGACAgggcGGCCGAGCugagGCGgCAguucgcgagccucACGGCGUu -3'
miRNA:   3'- -GUUGUa---CCGGCUUG----CGU-GU-------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 74921 0.67 0.940645
Target:  5'- -----aGGCCGuucggggGGCGCccccugagguuACGGCGGCGCu -3'
miRNA:   3'- guuguaCCGGC-------UUGCG-----------UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 128230 0.67 0.939694
Target:  5'- gCGGCGUcGGCCGugcacaggaaGACGCccaacaGCAaggcguuugucagcACGGCGCg -3'
miRNA:   3'- -GUUGUA-CCGGC----------UUGCG------UGU--------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 133480 0.67 0.950047
Target:  5'- aCGGCAUGcguGCCGGaggaggACGCACucACGGCcCg -3'
miRNA:   3'- -GUUGUAC---CGGCU------UGCGUGu-UGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 16128 0.67 0.941117
Target:  5'- ----cUGGCggUGAAUGUAguCAACGGCGCu -3'
miRNA:   3'- guuguACCG--GCUUGCGU--GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 136532 0.67 0.945703
Target:  5'- uGACG-GGCCGcuCGgGCcgccCGGCGCa -3'
miRNA:   3'- gUUGUaCCGGCuuGCgUGuu--GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.