miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 2837 0.66 0.965085
Target:  5'- gGGCGUGGagGGGgGCGCG--GGCGCg -3'
miRNA:   3'- gUUGUACCggCUUgCGUGUugCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 43497 0.66 0.958026
Target:  5'- uCGACggGGCCGuGGCgGCcCAucaggacaagauGCGGCGCc -3'
miRNA:   3'- -GUUGuaCCGGC-UUG-CGuGU------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 34308 0.66 0.961668
Target:  5'- gCGGCGggGGgCG-GCGCGCcgGACGGgGCg -3'
miRNA:   3'- -GUUGUa-CCgGCuUGCGUG--UUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 5659 0.66 0.968283
Target:  5'- --cCAUGGgCGGG-GCGCGAgGGCGg -3'
miRNA:   3'- guuGUACCgGCUUgCGUGUUgCCGCg -5'
5602 3' -53.6 NC_001806.1 + 112415 0.66 0.958026
Target:  5'- -cGCAU-GCCGAcACGCGCGgGCGGC-Cg -3'
miRNA:   3'- guUGUAcCGGCU-UGCGUGU-UGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 24951 0.66 0.965085
Target:  5'- aGGCGccUGGgaCGAagACG-ACGGCGGCGCg -3'
miRNA:   3'- gUUGU--ACCg-GCU--UGCgUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76382 0.66 0.971266
Target:  5'- gGACGc-GCUGGugGCGUGCGugGCGGCGCu -3'
miRNA:   3'- gUUGUacCGGCU--UGCGUGU--UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 144205 0.66 0.965085
Target:  5'- gCAGCcgccGCCGAcacCGCAgAGcCGGCGCg -3'
miRNA:   3'- -GUUGuac-CGGCUu--GCGUgUU-GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 2419 0.66 0.958026
Target:  5'- gCAGCG-GGcCCGAgGCGCGCAGgGG-GCc -3'
miRNA:   3'- -GUUGUaCC-GGCU-UGCGUGUUgCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 143119 0.66 0.968283
Target:  5'- gGGCGUGGCUgccgggagGGGcCGCGgAugGGCGg -3'
miRNA:   3'- gUUGUACCGG--------CUU-GCGUgUugCCGCg -5'
5602 3' -53.6 NC_001806.1 + 10724 0.66 0.961668
Target:  5'- cCAGCG-GGaCCgGAGCGCGCAugcACGcCGCa -3'
miRNA:   3'- -GUUGUaCC-GG-CUUGCGUGU---UGCcGCG- -5'
5602 3' -53.6 NC_001806.1 + 107350 0.66 0.971266
Target:  5'- cCGGCAgccguucuUGGCUG-GCGUccccuCGGCGGUGCa -3'
miRNA:   3'- -GUUGU--------ACCGGCuUGCGu----GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 104687 0.66 0.954154
Target:  5'- aGAUAUcGGCCGGGgaCGCGGCGGUGg -3'
miRNA:   3'- gUUGUA-CCGGCUUgcGUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 96370 0.66 0.965085
Target:  5'- --cCAUGcGCCaGGGCGCccccgcGCGGgGGCGCc -3'
miRNA:   3'- guuGUAC-CGG-CUUGCG------UGUUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 14133 0.66 0.965085
Target:  5'- gGACAUGGUUugGGGgGCGCAcCGGUGa -3'
miRNA:   3'- gUUGUACCGG--CUUgCGUGUuGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 91505 0.66 0.961668
Target:  5'- cCAAgAU-GCUguuuuaccugGAGCGCuGCGACGGCGCc -3'
miRNA:   3'- -GUUgUAcCGG----------CUUGCG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 147633 0.66 0.965085
Target:  5'- gCGACuggGGCacacGGCGCGCGuccGCGGgGCg -3'
miRNA:   3'- -GUUGua-CCGgc--UUGCGUGU---UGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 86833 0.66 0.967973
Target:  5'- gCAGCAUcucgcGGCCGAugGUcgucaccgucgcgGCAAC-GUGCa -3'
miRNA:   3'- -GUUGUA-----CCGGCUugCG-------------UGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 106950 0.66 0.971266
Target:  5'- --uCGUGaacGCCGcccACGCA-AACGGCGCg -3'
miRNA:   3'- guuGUAC---CGGCu--UGCGUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 94996 0.66 0.961668
Target:  5'- cCAGCAac-CUGAcCGCGCuggcGCGGCGCg -3'
miRNA:   3'- -GUUGUaccGGCUuGCGUGu---UGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.