miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 5659 0.66 0.968283
Target:  5'- --cCAUGGgCGGG-GCGCGAgGGCGg -3'
miRNA:   3'- guuGUACCgGCUUgCGUGUUgCCGCg -5'
5602 3' -53.6 NC_001806.1 + 6093 0.69 0.881839
Target:  5'- gCGGCGgggGGCgGGucucuccgGCGCACAuaaaggccCGGCGCg -3'
miRNA:   3'- -GUUGUa--CCGgCU--------UGCGUGUu-------GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 10028 0.67 0.941117
Target:  5'- gAGCcucGGCCGAACaGCGCggUGGgGg -3'
miRNA:   3'- gUUGua-CCGGCUUG-CGUGuuGCCgCg -5'
5602 3' -53.6 NC_001806.1 + 10724 0.66 0.961668
Target:  5'- cCAGCG-GGaCCgGAGCGCGCAugcACGcCGCa -3'
miRNA:   3'- -GUUGUaCC-GG-CUUGCGUGU---UGCcGCG- -5'
5602 3' -53.6 NC_001806.1 + 11382 0.67 0.939694
Target:  5'- uCGGCgAUGGCCGucagggagggcauuGGCGUGCGugacgacCGGCGCc -3'
miRNA:   3'- -GUUG-UACCGGC--------------UUGCGUGUu------GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 12139 0.72 0.733334
Target:  5'- gCGACAcaGGgCGAAUGcCACGGCGGgGCg -3'
miRNA:   3'- -GUUGUa-CCgGCUUGC-GUGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 12820 0.66 0.971266
Target:  5'- uCGGgGUGGCCGGgggaugguaAgGCGucGCGGCGUc -3'
miRNA:   3'- -GUUgUACCGGCU---------UgCGUguUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 13148 0.67 0.949624
Target:  5'- aGGCA-GGCUGAcggggggAUGCGCAGCgggagGGCGUa -3'
miRNA:   3'- gUUGUaCCGGCU-------UGCGUGUUG-----CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 14133 0.66 0.965085
Target:  5'- gGACAUGGUUugGGGgGCGCAcCGGUGa -3'
miRNA:   3'- gUUGUACCGG--CUUgCGUGUuGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 15709 0.69 0.895622
Target:  5'- -----cGGUCGggUGUACGGCGG-GCg -3'
miRNA:   3'- guuguaCCGGCuuGCGUGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 16128 0.67 0.941117
Target:  5'- ----cUGGCggUGAAUGUAguCAACGGCGCu -3'
miRNA:   3'- guuguACCG--GCUUGCGU--GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 20098 0.67 0.936288
Target:  5'- --uCGUGGCCGGcgccgucuGCGgGCGuCGGuCGCg -3'
miRNA:   3'- guuGUACCGGCU--------UGCgUGUuGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 20602 0.7 0.851578
Target:  5'- --cCAUGGCaGAugGCGCGgauggGCGGgGCc -3'
miRNA:   3'- guuGUACCGgCUugCGUGU-----UGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 21504 0.66 0.96639
Target:  5'- gCGACcgGGCCccggcccggggccgcGAACGggaggcccCGCuacGCGGCGCg -3'
miRNA:   3'- -GUUGuaCCGG---------------CUUGC--------GUGu--UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 21611 0.69 0.867143
Target:  5'- aGACGUcgucacGGCCGGugGCGgcCAuCGGCGUc -3'
miRNA:   3'- gUUGUA------CCGGCUugCGU--GUuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 21735 0.81 0.275508
Target:  5'- aCGACGcGGCCGAccACGCACGcgaGGCGCg -3'
miRNA:   3'- -GUUGUaCCGGCU--UGCGUGUug-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 21908 0.7 0.843485
Target:  5'- gAGCGccGCCGGGCccGCGCGGCGGUGg -3'
miRNA:   3'- gUUGUacCGGCUUG--CGUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 22433 0.73 0.692919
Target:  5'- uCGGCuggGGCCuGGCGCACG-CGGCGg -3'
miRNA:   3'- -GUUGua-CCGGcUUGCGUGUuGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 22514 0.66 0.954154
Target:  5'- cCAGCcUGcGCCGcgccuACGCGCcccuguUGGCGCg -3'
miRNA:   3'- -GUUGuAC-CGGCu----UGCGUGuu----GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 22632 0.73 0.702107
Target:  5'- -cGCAccGGgCGAGCGCGCGgugcccgccggguACGGCGCc -3'
miRNA:   3'- guUGUa-CCgGCUUGCGUGU-------------UGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.