miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 4316 0.73 0.692919
Target:  5'- uGGCGUcgcGGCCGGccaccgccGCGCGggccCGGCGGCGCu -3'
miRNA:   3'- gUUGUA---CCGGCU--------UGCGU----GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 140901 0.73 0.692919
Target:  5'- gGGCG-GGCCGucauccGCGCGCGuuggggagaaagACGGCGCu -3'
miRNA:   3'- gUUGUaCCGGCu-----UGCGUGU------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 24288 0.73 0.692919
Target:  5'- ---aGUGcGCCGuGCGCugGccgGCGGCGCg -3'
miRNA:   3'- guugUAC-CGGCuUGCGugU---UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 22433 0.73 0.692919
Target:  5'- uCGGCuggGGCCuGGCGCACG-CGGCGg -3'
miRNA:   3'- -GUUGua-CCGGcUUGCGUGUuGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 22632 0.73 0.702107
Target:  5'- -cGCAccGGgCGAGCGCGCGgugcccgccggguACGGCGCc -3'
miRNA:   3'- guUGUa-CCgGCUUGCGUGU-------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 121350 0.73 0.703125
Target:  5'- gAGCcaGUGGUCGGcgaGCugGAUGGCGCg -3'
miRNA:   3'- gUUG--UACCGGCUug-CGugUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 2950 0.72 0.712257
Target:  5'- gGGCcgGGCCGGgacucuuGCGCuuGCGccccucccGCGGCGCg -3'
miRNA:   3'- gUUGuaCCGGCU-------UGCG--UGU--------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 24662 0.72 0.713269
Target:  5'- -uACGUGGCgcugGGGCGCGaGGCGGUGCg -3'
miRNA:   3'- guUGUACCGg---CUUGCGUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 30373 0.72 0.713269
Target:  5'- gAACAgagucUGuGCCGGGCGCgugcgACggUGGCGCg -3'
miRNA:   3'- gUUGU-----AC-CGGCUUGCG-----UGuuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 35863 0.72 0.713269
Target:  5'- -uACAgGGCCcAACGCGCGGC-GCGCg -3'
miRNA:   3'- guUGUaCCGGcUUGCGUGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 75460 0.72 0.720328
Target:  5'- gAGCAUgccucccugauccaGGCCGcgacGCGCGCGAccacCGGCGCg -3'
miRNA:   3'- gUUGUA--------------CCGGCu---UGCGUGUU----GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 24509 0.72 0.722338
Target:  5'- -cGCcgGGCCGugcugccGGCGCugGACGGCcggGCg -3'
miRNA:   3'- guUGuaCCGGC-------UUGCGugUUGCCG---CG- -5'
5602 3' -53.6 NC_001806.1 + 103442 0.72 0.723342
Target:  5'- gAugAgggGGCgCGAugGCACAGCGGaccgGCg -3'
miRNA:   3'- gUugUa--CCG-GCUugCGUGUUGCCg---CG- -5'
5602 3' -53.6 NC_001806.1 + 67034 0.72 0.733334
Target:  5'- uGACGUGGgcCCGuacCGCAuCGGCGGCGUc -3'
miRNA:   3'- gUUGUACC--GGCuu-GCGU-GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 12139 0.72 0.733334
Target:  5'- gCGACAcaGGgCGAAUGcCACGGCGGgGCg -3'
miRNA:   3'- -GUUGUa-CCgGCUUGC-GUGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 70961 0.72 0.743236
Target:  5'- uCAGCucGGCCGAccaGCGCGCcGCGGC-Ca -3'
miRNA:   3'- -GUUGuaCCGGCU---UGCGUGuUGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 92908 0.72 0.743236
Target:  5'- -cGCGUGGUCc-GCGCAgGGCGGgGCg -3'
miRNA:   3'- guUGUACCGGcuUGCGUgUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 1821 0.72 0.743236
Target:  5'- -cACGUuGCCGccgcggcacaGGCGCAgCGGCGGCGCg -3'
miRNA:   3'- guUGUAcCGGC----------UUGCGU-GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 151563 0.72 0.743236
Target:  5'- gCGGCGggGGCCgcGAugGCgGCGGCGGCGg -3'
miRNA:   3'- -GUUGUa-CCGG--CUugCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 126033 0.72 0.753037
Target:  5'- cCAGCcugcGGCCGGAUGUACAGucuuCGGCGg -3'
miRNA:   3'- -GUUGua--CCGGCUUGCGUGUU----GCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.