miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 1517 0.66 0.96442
Target:  5'- cCAGCAgGGCgCGGGCGCAaaagucccuccGCGGCccGCg -3'
miRNA:   3'- -GUUGUaCCG-GCUUGCGUgu---------UGCCG--CG- -5'
5602 3' -53.6 NC_001806.1 + 10724 0.66 0.961668
Target:  5'- cCAGCG-GGaCCgGAGCGCGCAugcACGcCGCa -3'
miRNA:   3'- -GUUGUaCC-GG-CUUGCGUGU---UGCcGCG- -5'
5602 3' -53.6 NC_001806.1 + 136361 0.66 0.961668
Target:  5'- aAACccggGGCCG-GCGCGCuccGCGGCcuccGCg -3'
miRNA:   3'- gUUGua--CCGGCuUGCGUGu--UGCCG----CG- -5'
5602 3' -53.6 NC_001806.1 + 109294 0.66 0.961668
Target:  5'- uGGCGgagGcGCCGGcgaaACGC-CAGCGGgGCc -3'
miRNA:   3'- gUUGUa--C-CGGCU----UGCGuGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 91505 0.66 0.961668
Target:  5'- cCAAgAU-GCUguuuuaccugGAGCGCuGCGACGGCGCc -3'
miRNA:   3'- -GUUgUAcCGG----------CUUGCG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 34308 0.66 0.961668
Target:  5'- gCGGCGggGGgCG-GCGCGCcgGACGGgGCg -3'
miRNA:   3'- -GUUGUa-CCgGCuUGCGUG--UUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 53839 0.66 0.961668
Target:  5'- gGAUcuuGCCGAcuggacGCGUGCGACGGCGg -3'
miRNA:   3'- gUUGuacCGGCU------UGCGUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 94996 0.66 0.961668
Target:  5'- cCAGCAac-CUGAcCGCGCuggcGCGGCGCg -3'
miRNA:   3'- -GUUGUaccGGCUuGCGUGu---UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 59869 0.66 0.961668
Target:  5'- aCGACGgcccaGGCCGGACGgACGAggaGGC-Ca -3'
miRNA:   3'- -GUUGUa----CCGGCUUGCgUGUUg--CCGcG- -5'
5602 3' -53.6 NC_001806.1 + 147687 0.66 0.9606
Target:  5'- -----gGGCCgGGGCGCGgGggcgggccccggagGCGGCGCu -3'
miRNA:   3'- guuguaCCGG-CUUGCGUgU--------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 95073 0.66 0.959511
Target:  5'- gGGCGgcgGGCgGAGCauuucgaucGCGCGuucgggagccaccugGCGGCGCu -3'
miRNA:   3'- gUUGUa--CCGgCUUG---------CGUGU---------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 70563 0.66 0.958026
Target:  5'- gCAGCAUGuaucacgacGCCaAGCGCGCGcUGGuCGCg -3'
miRNA:   3'- -GUUGUAC---------CGGcUUGCGUGUuGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 2419 0.66 0.958026
Target:  5'- gCAGCG-GGcCCGAgGCGCGCAGgGG-GCc -3'
miRNA:   3'- -GUUGUaCC-GGCU-UGCGUGUUgCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 112415 0.66 0.958026
Target:  5'- -cGCAU-GCCGAcACGCGCGgGCGGC-Cg -3'
miRNA:   3'- guUGUAcCGGCU-UGCGUGU-UGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 43497 0.66 0.958026
Target:  5'- uCGACggGGCCGuGGCgGCcCAucaggacaagauGCGGCGCc -3'
miRNA:   3'- -GUUGuaCCGGC-UUG-CGuGU------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 104687 0.66 0.954154
Target:  5'- aGAUAUcGGCCGGGgaCGCGGCGGUGg -3'
miRNA:   3'- gUUGUA-CCGGCUUgcGUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 106753 0.66 0.954154
Target:  5'- uGACGcgGGCCGAcaacggcuccGCGCugGACGccuccgccGCGUg -3'
miRNA:   3'- gUUGUa-CCGGCU----------UGCGugUUGC--------CGCG- -5'
5602 3' -53.6 NC_001806.1 + 98998 0.66 0.954154
Target:  5'- cCGACAUGGUC--AUGCGCaAGCGcCGCa -3'
miRNA:   3'- -GUUGUACCGGcuUGCGUG-UUGCcGCG- -5'
5602 3' -53.6 NC_001806.1 + 22514 0.66 0.954154
Target:  5'- cCAGCcUGcGCCGcgccuACGCGCcccuguUGGCGCg -3'
miRNA:   3'- -GUUGuAC-CGGCu----UGCGUGuu----GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 79688 0.66 0.954154
Target:  5'- cCGACAccGCCGGGCaCGCucccUGGCGCg -3'
miRNA:   3'- -GUUGUacCGGCUUGcGUGuu--GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.