miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 50236 0.66 0.954154
Target:  5'- -cGCGUGGCCGccCGCuAUGcCGGcCGCa -3'
miRNA:   3'- guUGUACCGGCuuGCG-UGUuGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 133480 0.67 0.950047
Target:  5'- aCGGCAUGcguGCCGGaggaggACGCACucACGGCcCg -3'
miRNA:   3'- -GUUGUAC---CGGCU------UGCGUGu-UGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 35547 0.67 0.950047
Target:  5'- cCAGCGa-GCCGcucGGCGCGCc-CGGCGCc -3'
miRNA:   3'- -GUUGUacCGGC---UUGCGUGuuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 42717 0.67 0.950047
Target:  5'- gAACGUGGCCuccGCGUcCAgggugGCGGCGa -3'
miRNA:   3'- gUUGUACCGGcu-UGCGuGU-----UGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 73256 0.67 0.950047
Target:  5'- aAACGUGGCCGc---CACGGCGGUu- -3'
miRNA:   3'- gUUGUACCGGCuugcGUGUUGCCGcg -5'
5602 3' -53.6 NC_001806.1 + 102387 0.67 0.950047
Target:  5'- uCAGCGUGGCgaucacGAUGUGCGACGccaGCGCu -3'
miRNA:   3'- -GUUGUACCGgc----UUGCGUGUUGC---CGCG- -5'
5602 3' -53.6 NC_001806.1 + 66382 0.67 0.950047
Target:  5'- gGGCAUcauGCCGAGCucuGCAaagGCGGCGUa -3'
miRNA:   3'- gUUGUAc--CGGCUUG---CGUgu-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 26995 0.67 0.950047
Target:  5'- gAGCG-GGCCGAcCGgGCucgguucCGGCGCc -3'
miRNA:   3'- gUUGUaCCGGCUuGCgUGuu-----GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 13148 0.67 0.949624
Target:  5'- aGGCA-GGCUGAcggggggAUGCGCAGCgggagGGCGUa -3'
miRNA:   3'- gUUGUaCCGGCU-------UGCGUGUUG-----CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 113676 0.67 0.945703
Target:  5'- -uGCAUGGCCGuguAC-CGgGACcugguGGCGCa -3'
miRNA:   3'- guUGUACCGGCu--UGcGUgUUG-----CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 136532 0.67 0.945703
Target:  5'- uGACG-GGCCGcuCGgGCcgccCGGCGCa -3'
miRNA:   3'- gUUGUaCCGGCuuGCgUGuu--GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 128288 0.67 0.945703
Target:  5'- gAGCcgGGCCGAcgACGCGaugauggguCGGgGCc -3'
miRNA:   3'- gUUGuaCCGGCU--UGCGUguu------GCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 1951 0.67 0.945703
Target:  5'- -cGCGccGCCGGccaGCGC-ACGGCGCa -3'
miRNA:   3'- guUGUacCGGCUug-CGUGuUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 148134 0.67 0.945703
Target:  5'- -uGCGUGagacGCCccgcccgucacgGGGgGCGCGGCGGCGCc -3'
miRNA:   3'- guUGUAC----CGG------------CUUgCGUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 80016 0.67 0.945703
Target:  5'- --cCGUaGG-CGGGC-CGCAGCGGCGCc -3'
miRNA:   3'- guuGUA-CCgGCUUGcGUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 89765 0.67 0.941117
Target:  5'- -----cGGCUGAugACGCGCGG-GGCGUg -3'
miRNA:   3'- guuguaCCGGCU--UGCGUGUUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 16128 0.67 0.941117
Target:  5'- ----cUGGCggUGAAUGUAguCAACGGCGCu -3'
miRNA:   3'- guuguACCG--GCUUGCGU--GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 132740 0.67 0.941117
Target:  5'- cCGGCGUGGCCucggcggcagccGGAUGCcuccuGCccGCGGUGCg -3'
miRNA:   3'- -GUUGUACCGG------------CUUGCG-----UGu-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 135586 0.67 0.941117
Target:  5'- -----aGGUCGGccGCGCGCuGCuGGCGCu -3'
miRNA:   3'- guuguaCCGGCU--UGCGUGuUG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 4426 0.67 0.941117
Target:  5'- gGGgGUGGcCCGGGCG-GgGGCGGCGUc -3'
miRNA:   3'- gUUgUACC-GGCUUGCgUgUUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.