miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 1415 0.7 0.835194
Target:  5'- --cCGUGGCCGAG-GCcCAgcgaaucccggGCGGCGCc -3'
miRNA:   3'- guuGUACCGGCUUgCGuGU-----------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 1517 0.66 0.96442
Target:  5'- cCAGCAgGGCgCGGGCGCAaaagucccuccGCGGCccGCg -3'
miRNA:   3'- -GUUGUaCCG-GCUUGCGUgu---------UGCCG--CG- -5'
5602 3' -53.6 NC_001806.1 + 1562 0.71 0.791053
Target:  5'- gGGCcgGGCCGGcGCGCACcGCcucGCGCc -3'
miRNA:   3'- gUUGuaCCGGCU-UGCGUGuUGc--CGCG- -5'
5602 3' -53.6 NC_001806.1 + 1613 0.69 0.881839
Target:  5'- gCAGCGgcgcgcccaGGCCccAGCGCGCGcagGCGGCGUg -3'
miRNA:   3'- -GUUGUa--------CCGGc-UUGCGUGU---UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 1781 0.69 0.873867
Target:  5'- cCGGCGUguccgGGCCGAagcgcguGCGCACG-CGGUaGCg -3'
miRNA:   3'- -GUUGUA-----CCGGCU-------UGCGUGUuGCCG-CG- -5'
5602 3' -53.6 NC_001806.1 + 1821 0.72 0.743236
Target:  5'- -cACGUuGCCGccgcggcacaGGCGCAgCGGCGGCGCg -3'
miRNA:   3'- guUGUAcCGGC----------UUGCGU-GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 1903 0.7 0.835194
Target:  5'- --cCcgGGCCGAacACGCggcccgaggccaGCAccguGCGGCGCa -3'
miRNA:   3'- guuGuaCCGGCU--UGCG------------UGU----UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 1951 0.67 0.945703
Target:  5'- -cGCGccGCCGGccaGCGC-ACGGCGCa -3'
miRNA:   3'- guUGUacCGGCUug-CGUGuUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 2419 0.66 0.958026
Target:  5'- gCAGCG-GGcCCGAgGCGCGCAGgGG-GCc -3'
miRNA:   3'- -GUUGUaCC-GGCU-UGCGUGUUgCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 2527 0.71 0.809213
Target:  5'- gGGCG-GGCCcGGCGCACcgcGCGGCGa -3'
miRNA:   3'- gUUGUaCCGGcUUGCGUGu--UGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 2739 0.71 0.800211
Target:  5'- uCGGCG-GGCCGGcGCGaCACGGCcacggGGCGCg -3'
miRNA:   3'- -GUUGUaCCGGCU-UGC-GUGUUG-----CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 2837 0.66 0.965085
Target:  5'- gGGCGUGGagGGGgGCGCG--GGCGCg -3'
miRNA:   3'- gUUGUACCggCUUgCGUGUugCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 2950 0.72 0.712257
Target:  5'- gGGCcgGGCCGGgacucuuGCGCuuGCGccccucccGCGGCGCg -3'
miRNA:   3'- gUUGuaCCGGCU-------UGCG--UGU--------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 2999 0.75 0.548532
Target:  5'- gCGGCGgcGGCCGccAGCGCGuCGGCGGCGUc -3'
miRNA:   3'- -GUUGUa-CCGGC--UUGCGU-GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 3287 0.71 0.800211
Target:  5'- aGGCggGGCgCGucgGCGUGCGGCGGCGg -3'
miRNA:   3'- gUUGuaCCG-GCu--UGCGUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 4316 0.73 0.692919
Target:  5'- uGGCGUcgcGGCCGGccaccgccGCGCGggccCGGCGGCGCu -3'
miRNA:   3'- gUUGUA---CCGGCU--------UGCGU----GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 4426 0.67 0.941117
Target:  5'- gGGgGUGGcCCGGGCG-GgGGCGGCGUc -3'
miRNA:   3'- gUUgUACC-GGCUUGCgUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 4607 0.69 0.874603
Target:  5'- cCGACGaGGUCGAugACGC-CGAUGGcCGCc -3'
miRNA:   3'- -GUUGUaCCGGCU--UGCGuGUUGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 4658 0.7 0.81805
Target:  5'- gCGGCGgcugGGCCGGcggGCGCGgCGACaGGCGg -3'
miRNA:   3'- -GUUGUa---CCGGCU---UGCGU-GUUG-CCGCg -5'
5602 3' -53.6 NC_001806.1 + 4737 0.68 0.913921
Target:  5'- gCGGCcccgGGCCGGGgcccgguCGC-CGGCGGCGUc -3'
miRNA:   3'- -GUUGua--CCGGCUU-------GCGuGUUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.