miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 76382 0.66 0.971266
Target:  5'- gGACGc-GCUGGugGCGUGCGugGCGGCGCu -3'
miRNA:   3'- gUUGUacCGGCU--UGCGUGU--UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 84246 0.75 0.558693
Target:  5'- aAACAcGGCCGGGgGCGCG--GGCGCa -3'
miRNA:   3'- gUUGUaCCGGCUUgCGUGUugCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 95299 0.75 0.568908
Target:  5'- gGGCGgggGGCgcggCGGACGCGCccaagGGCGGCGCg -3'
miRNA:   3'- gUUGUa--CCG----GCUUGCGUG-----UUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76656 0.75 0.579168
Target:  5'- gCGAcCGUGGCCaaGACGCugGACcaGGCGCg -3'
miRNA:   3'- -GUU-GUACCGGc-UUGCGugUUG--CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 79523 0.74 0.651666
Target:  5'- gGGCGUcccGGCCGAAaGCACGcggcCGGCGCc -3'
miRNA:   3'- gUUGUA---CCGGCUUgCGUGUu---GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 72475 0.73 0.67236
Target:  5'- -cGCGUGGCCaucACGCACccccuGCGGgGCg -3'
miRNA:   3'- guUGUACCGGcu-UGCGUGu----UGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 35281 0.73 0.681633
Target:  5'- --uCGUGGCUuugGGGCGCAUccauggcuucggaGGCGGCGCa -3'
miRNA:   3'- guuGUACCGG---CUUGCGUG-------------UUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 76240 0.73 0.682661
Target:  5'- --uCcgGGCCG-ACGCGCGGC-GCGCg -3'
miRNA:   3'- guuGuaCCGGCuUGCGUGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 22433 0.73 0.692919
Target:  5'- uCGGCuggGGCCuGGCGCACG-CGGCGg -3'
miRNA:   3'- -GUUGua-CCGGcUUGCGUGUuGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 142177 0.75 0.548532
Target:  5'- cCGACGUGGCgauGAUGgGCGGCGGCGUg -3'
miRNA:   3'- -GUUGUACCGgc-UUGCgUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 2999 0.75 0.548532
Target:  5'- gCGGCGgcGGCCGccAGCGCGuCGGCGGCGUc -3'
miRNA:   3'- -GUUGUa-CCGGC--UUGCGU-GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 24072 0.76 0.528389
Target:  5'- cCGACGUGucggcGCUGGGCGCACAG-GGCGUg -3'
miRNA:   3'- -GUUGUAC-----CGGCUUGCGUGUUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 90306 0.85 0.181287
Target:  5'- cCAACGUGGCCGuggucguggguucuCGCACGACGGgGCu -3'
miRNA:   3'- -GUUGUACCGGCuu------------GCGUGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 74630 0.83 0.210429
Target:  5'- -cGCAUGGCCGAggaaGCGCuGCGGCaGGCGCg -3'
miRNA:   3'- guUGUACCGGCU----UGCG-UGUUG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 21735 0.81 0.275508
Target:  5'- aCGACGcGGCCGAccACGCACGcgaGGCGCg -3'
miRNA:   3'- -GUUGUaCCGGCU--UGCGUGUug-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 65367 0.78 0.396393
Target:  5'- gCGACGUGGgguucccCCGAAUGcCACGACGGCGg -3'
miRNA:   3'- -GUUGUACC-------GGCUUGC-GUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 102255 0.78 0.423623
Target:  5'- ---uGUGGCCccggcugagGAACGCgGCGGCGGCGCg -3'
miRNA:   3'- guugUACCGG---------CUUGCG-UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 22841 0.77 0.479348
Target:  5'- aGGCGcUGGCCGAGgGCuuCGACGGCGa -3'
miRNA:   3'- gUUGU-ACCGGCUUgCGu-GUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 126119 0.76 0.498714
Target:  5'- -uGCGUgGGCCGcGCGgACGACGGCGg -3'
miRNA:   3'- guUGUA-CCGGCuUGCgUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 131451 0.76 0.498714
Target:  5'- -uACGUGGUCGucCGCGgacCGGCGGCGCu -3'
miRNA:   3'- guUGUACCGGCuuGCGU---GUUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.