miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 151563 0.72 0.743236
Target:  5'- gCGGCGggGGCCgcGAugGCgGCGGCGGCGg -3'
miRNA:   3'- -GUUGUa-CCGG--CUugCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 151284 0.68 0.914515
Target:  5'- gGGCcggGGCCGGG-GgGCGGCGGCGg -3'
miRNA:   3'- gUUGua-CCGGCUUgCgUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 150656 0.67 0.931213
Target:  5'- gGACGcugguUGGCCGGGCcccgccGCGCuGGCGGcCGCc -3'
miRNA:   3'- gUUGU-----ACCGGCUUG------CGUG-UUGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 148682 0.69 0.881839
Target:  5'- -uGCAUGcacgggaagguGUCGAGCGCAgGugGGgCGCg -3'
miRNA:   3'- guUGUAC-----------CGGCUUGCGUgUugCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 148134 0.67 0.945703
Target:  5'- -uGCGUGagacGCCccgcccgucacgGGGgGCGCGGCGGCGCc -3'
miRNA:   3'- guUGUAC----CGG------------CUUgCGUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 147793 0.69 0.881839
Target:  5'- gGGCGgggGGCgGAGCcugGCAugGGCGCc -3'
miRNA:   3'- gUUGUa--CCGgCUUGcg-UGUugCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 147730 0.7 0.826713
Target:  5'- -cACggGGCCacGGcCGCGCGGgGGCGCg -3'
miRNA:   3'- guUGuaCCGG--CUuGCGUGUUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 147687 0.66 0.9606
Target:  5'- -----gGGCCgGGGCGCGgGggcgggccccggagGCGGCGCu -3'
miRNA:   3'- guuguaCCGG-CUUGCGUgU--------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 147633 0.66 0.965085
Target:  5'- gCGACuggGGCacacGGCGCGCGuccGCGGgGCg -3'
miRNA:   3'- -GUUGua-CCGgc--UUGCGUGU---UGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 147470 0.69 0.874603
Target:  5'- uCGACAgaggcGGCgGAGgggaGCGgGGCGGCGCc -3'
miRNA:   3'- -GUUGUa----CCGgCUUg---CGUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 144205 0.66 0.965085
Target:  5'- gCAGCcgccGCCGAcacCGCAgAGcCGGCGCg -3'
miRNA:   3'- -GUUGuac-CGGCUu--GCGUgUU-GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 143119 0.66 0.968283
Target:  5'- gGGCGUGGCUgccgggagGGGcCGCGgAugGGCGg -3'
miRNA:   3'- gUUGUACCGG--------CUU-GCGUgUugCCGCg -5'
5602 3' -53.6 NC_001806.1 + 142177 0.75 0.548532
Target:  5'- cCGACGUGGCgauGAUGgGCGGCGGCGUg -3'
miRNA:   3'- -GUUGUACCGgc-UUGCgUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 141707 0.66 0.964754
Target:  5'- ----cUGGCCGAuguaaccACGCGCAccucgucgGgGGUGCa -3'
miRNA:   3'- guuguACCGGCU-------UGCGUGU--------UgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 141413 0.68 0.914515
Target:  5'- aAACAccaGGCCGGggcgGCGCGCGGCcaaccGGCGg -3'
miRNA:   3'- gUUGUa--CCGGCU----UGCGUGUUG-----CCGCg -5'
5602 3' -53.6 NC_001806.1 + 140901 0.73 0.692919
Target:  5'- gGGCG-GGCCGucauccGCGCGCGuuggggagaaagACGGCGCu -3'
miRNA:   3'- gUUGUaCCGGCu-----UGCGUGU------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 138791 0.67 0.936288
Target:  5'- ---aAUGGCCGAcgcagGCGCcccCGGCGaGCGUg -3'
miRNA:   3'- guugUACCGGCU-----UGCGu--GUUGC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 136532 0.67 0.945703
Target:  5'- uGACG-GGCCGcuCGgGCcgccCGGCGCa -3'
miRNA:   3'- gUUGUaCCGGCuuGCgUGuu--GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 136361 0.66 0.961668
Target:  5'- aAACccggGGCCG-GCGCGCuccGCGGCcuccGCg -3'
miRNA:   3'- gUUGua--CCGGCuUGCGUGu--UGCCG----CG- -5'
5602 3' -53.6 NC_001806.1 + 135586 0.67 0.941117
Target:  5'- -----aGGUCGGccGCGCGCuGCuGGCGCu -3'
miRNA:   3'- guuguaCCGGCU--UGCGUGuUG-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.