miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 132740 0.67 0.941117
Target:  5'- cCGGCGUGGCCucggcggcagccGGAUGCcuccuGCccGCGGUGCg -3'
miRNA:   3'- -GUUGUACCGG------------CUUGCG-----UGu-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 51098 0.67 0.941117
Target:  5'- aGACGagggGGCCGccgcccugcgGGCGCACGugucggggaGGCGCg -3'
miRNA:   3'- gUUGUa---CCGGC----------UUGCGUGUug-------CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 50039 0.67 0.940645
Target:  5'- aCGACAgggcGGCCGAGCugagGCGgCAguucgcgagccucACGGCGUu -3'
miRNA:   3'- -GUUGUa---CCGGCUUG----CGU-GU-------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 74921 0.67 0.940645
Target:  5'- -----aGGCCGuucggggGGCGCccccugagguuACGGCGGCGCu -3'
miRNA:   3'- guuguaCCGGC-------UUGCG-----------UGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 11382 0.67 0.939694
Target:  5'- uCGGCgAUGGCCGucagggagggcauuGGCGUGCGugacgacCGGCGCc -3'
miRNA:   3'- -GUUG-UACCGGC--------------UUGCGUGUu------GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 128230 0.67 0.939694
Target:  5'- gCGGCGUcGGCCGugcacaggaaGACGCccaacaGCAaggcguuugucagcACGGCGCg -3'
miRNA:   3'- -GUUGUA-CCGGC----------UUGCG------UGU--------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 23749 0.67 0.936288
Target:  5'- -----aGGCCGcgUGCgGCGGCGGCGa -3'
miRNA:   3'- guuguaCCGGCuuGCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 47704 0.67 0.936288
Target:  5'- -uGCAccGCCaGGCGCACAugcGCGGaCGCg -3'
miRNA:   3'- guUGUacCGGcUUGCGUGU---UGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 94746 0.67 0.936288
Target:  5'- -cGCcgGGCuguCGGACGC-CGACcGCGCg -3'
miRNA:   3'- guUGuaCCG---GCUUGCGuGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 20098 0.67 0.936288
Target:  5'- --uCGUGGCCGGcgccgucuGCGgGCGuCGGuCGCg -3'
miRNA:   3'- guuGUACCGGCU--------UGCgUGUuGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 122361 0.67 0.936288
Target:  5'- uGGCGcgcUGGCgGAagugGCGCACGGCcGCGUc -3'
miRNA:   3'- gUUGU---ACCGgCU----UGCGUGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 138791 0.67 0.936288
Target:  5'- ---aAUGGCCGAcgcagGCGCcccCGGCGaGCGUg -3'
miRNA:   3'- guugUACCGGCU-----UGCGu--GUUGC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 84144 0.67 0.935791
Target:  5'- -cGCggGGCaCGcACGCGCGACGuggcuccGCGCu -3'
miRNA:   3'- guUGuaCCG-GCuUGCGUGUUGC-------CGCG- -5'
5602 3' -53.6 NC_001806.1 + 94266 0.67 0.931213
Target:  5'- -cGCGUGGCgCGAGgGCG-AGCGGCu- -3'
miRNA:   3'- guUGUACCG-GCUUgCGUgUUGCCGcg -5'
5602 3' -53.6 NC_001806.1 + 150656 0.67 0.931213
Target:  5'- gGACGcugguUGGCCGGGCcccgccGCGCuGGCGGcCGCc -3'
miRNA:   3'- gUUGU-----ACCGGCUUG------CGUG-UUGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 42173 0.67 0.931213
Target:  5'- cCAGCGcacUGGUcucgCGGACGUcggccGCAauACGGCGCu -3'
miRNA:   3'- -GUUGU---ACCG----GCUUGCG-----UGU--UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 119123 0.67 0.931213
Target:  5'- -uACGcGGCCGAcagcACGCGCAucauGCGCg -3'
miRNA:   3'- guUGUaCCGGCU----UGCGUGUugc-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 132845 0.67 0.931213
Target:  5'- -----cGGCCGucgggccCGuCugGACGGCGCg -3'
miRNA:   3'- guuguaCCGGCuu-----GC-GugUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 57143 0.67 0.929643
Target:  5'- -cGCGgugGGCCGcGcgaggggaggggguGCGCGCAuaaagcccagcACGGCGCa -3'
miRNA:   3'- guUGUa--CCGGC-U--------------UGCGUGU-----------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 112154 0.68 0.928051
Target:  5'- gCGGCAcGGCCGAccagaugcugcacguGCuGCugGAaaaGGCGCc -3'
miRNA:   3'- -GUUGUaCCGGCU---------------UG-CGugUUg--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.