miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 22841 0.77 0.479348
Target:  5'- aGGCGcUGGCCGAGgGCuuCGACGGCGa -3'
miRNA:   3'- gUUGU-ACCGGCUUgCGu-GUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 23234 0.68 0.920327
Target:  5'- gGACGccGCCG-ACGCGCuGGCGGcCGCc -3'
miRNA:   3'- gUUGUacCGGCuUGCGUG-UUGCC-GCG- -5'
5602 3' -53.6 NC_001806.1 + 23555 0.7 0.826713
Target:  5'- gCGGCAgcccccggGGCCcAGCcaCACGGCGGCGCc -3'
miRNA:   3'- -GUUGUa-------CCGGcUUGc-GUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 23749 0.67 0.936288
Target:  5'- -----aGGCCGcgUGCgGCGGCGGCGa -3'
miRNA:   3'- guuguaCCGGCuuGCG-UGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 24034 0.7 0.851578
Target:  5'- gGACAcGGCCGccugGGCGgGCAAuuggacCGGCGCc -3'
miRNA:   3'- gUUGUaCCGGC----UUGCgUGUU------GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 24072 0.76 0.528389
Target:  5'- cCGACGUGucggcGCUGGGCGCACAG-GGCGUg -3'
miRNA:   3'- -GUUGUAC-----CGGCUUGCGUGUUgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 24288 0.73 0.692919
Target:  5'- ---aGUGcGCCGuGCGCugGccgGCGGCGCg -3'
miRNA:   3'- guugUAC-CGGCuUGCGugU---UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 24509 0.72 0.722338
Target:  5'- -cGCcgGGCCGugcugccGGCGCugGACGGCcggGCg -3'
miRNA:   3'- guUGuaCCGGC-------UUGCGugUUGCCG---CG- -5'
5602 3' -53.6 NC_001806.1 + 24629 0.66 0.965085
Target:  5'- -cGCuggGGCCuGGGCGCGCcgcuGCGGCcCg -3'
miRNA:   3'- guUGua-CCGG-CUUGCGUGu---UGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 24662 0.72 0.713269
Target:  5'- -uACGUGGCgcugGGGCGCGaGGCGGUGCg -3'
miRNA:   3'- guUGUACCGg---CUUGCGUgUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 24951 0.66 0.965085
Target:  5'- aGGCGccUGGgaCGAagACG-ACGGCGGCGCg -3'
miRNA:   3'- gUUGU--ACCg-GCU--UGCgUGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 25865 0.69 0.888847
Target:  5'- gCAGCccgGGCCccccgcGGGCGCGCG-CGcGCGCa -3'
miRNA:   3'- -GUUGua-CCGG------CUUGCGUGUuGC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 25922 0.68 0.914515
Target:  5'- gCGGCGUGcGC---GCGCGCGGCgGGCGUg -3'
miRNA:   3'- -GUUGUAC-CGgcuUGCGUGUUG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 26613 0.7 0.851578
Target:  5'- aCGACGacUGGCCGGAcagcccccCGCcCGAgcCGGCGCc -3'
miRNA:   3'- -GUUGU--ACCGGCUU--------GCGuGUU--GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 26995 0.67 0.950047
Target:  5'- gAGCG-GGCCGAcCGgGCucgguucCGGCGCc -3'
miRNA:   3'- gUUGUaCCGGCUuGCgUGuu-----GCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 27283 0.69 0.881839
Target:  5'- -----cGGCCGccaGCGCGGCGGgGCc -3'
miRNA:   3'- guuguaCCGGCuugCGUGUUGCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 28171 0.68 0.920327
Target:  5'- cCAGCGcgaggugaggGGCCGGGCGC-CAugucuGgGGCGCc -3'
miRNA:   3'- -GUUGUa---------CCGGCUUGCGuGU-----UgCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 29928 0.66 0.968283
Target:  5'- aCAGCAgcGGCgGGGCGgcucccgccaguCGCGagccGCGGCGCc -3'
miRNA:   3'- -GUUGUa-CCGgCUUGC------------GUGU----UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 30373 0.72 0.713269
Target:  5'- gAACAgagucUGuGCCGGGCGCgugcgACggUGGCGCg -3'
miRNA:   3'- gUUGU-----AC-CGGCUUGCG-----UGuuGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 30410 0.69 0.874603
Target:  5'- gCGGCucgggggGGCCGGGCGUggaggguggGCAcgggcccucccGCGGCGCc -3'
miRNA:   3'- -GUUGua-----CCGGCUUGCG---------UGU-----------UGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.