Results 1 - 20 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 113762 | 0.97 | 0.00568 |
Target: 5'- gGGCGGGCAGG-GCAAGCCGAGCUGAAu -3' miRNA: 3'- -CCGCCCGUCCgCGUUCGGCUCGACUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 29675 | 0.81 | 0.073382 |
Target: 5'- aGGCGGGCGGGCgaggaaaggGCGGGCCGGGgaGGGg -3' miRNA: 3'- -CCGCCCGUCCG---------CGUUCGGCUCgaCUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 34395 | 0.77 | 0.151 |
Target: 5'- gGGUGGGC-GGCGguGGCCGGGCcGGg -3' miRNA: 3'- -CCGCCCGuCCGCguUCGGCUCGaCUu -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 117870 | 0.75 | 0.198314 |
Target: 5'- aGCGGGCGaugucGGCGgGGGCCGAGCccgUGAGc -3' miRNA: 3'- cCGCCCGU-----CCGCgUUCGGCUCG---ACUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 30515 | 0.74 | 0.240425 |
Target: 5'- cGGCGGuGCguccgaggaagAGGCGCGGGUCGGGCcagGAAa -3' miRNA: 3'- -CCGCC-CG-----------UCCGCGUUCGGCUCGa--CUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 33648 | 0.74 | 0.240425 |
Target: 5'- gGGCGGGgGGGggguguCGCGGGCCGucuGCUGGc -3' miRNA: 3'- -CCGCCCgUCC------GCGUUCGGCu--CGACUu -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 51118 | 0.74 | 0.23422 |
Target: 5'- uGCGGGCgcacgugucggggAGGCGCGcGaCCGGGCUGGGa -3' miRNA: 3'- cCGCCCG-------------UCCGCGUuC-GGCUCGACUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 21962 | 0.74 | 0.218504 |
Target: 5'- cGGcCGGGCAGccccgGCGGGUCGAGCUGGAc -3' miRNA: 3'- -CC-GCCCGUCcg---CGUUCGGCUCGACUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 122021 | 0.73 | 0.276709 |
Target: 5'- gGGUGGGUGGGUGUggGUCGGGUcGAc -3' miRNA: 3'- -CCGCCCGUCCGCGuuCGGCUCGaCUu -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 2807 | 0.73 | 0.264151 |
Target: 5'- gGGCuGGGCGGGgGCGGGCuCGGGCcccgGGGg -3' miRNA: 3'- -CCG-CCCGUCCgCGUUCG-GCUCGa---CUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 135110 | 0.73 | 0.264151 |
Target: 5'- aGGgGGGCGGGgGCAGcGCUGcguGCUGGAc -3' miRNA: 3'- -CCgCCCGUCCgCGUU-CGGCu--CGACUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 2665 | 0.73 | 0.258046 |
Target: 5'- cGGCGGccGCGGGCGCc-GCCGuguGGCUGGg -3' miRNA: 3'- -CCGCC--CGUCCGCGuuCGGC---UCGACUu -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 128267 | 0.73 | 0.258046 |
Target: 5'- aGGCGuuugucaGCAcGGCGCGAGCCGGGCcGAc -3' miRNA: 3'- -CCGCc------CGU-CCGCGUUCGGCUCGaCUu -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 94169 | 0.72 | 0.310182 |
Target: 5'- uGCGGGCGcugcGGCGUcgucugAGGCCGGGcCUGGAg -3' miRNA: 3'- cCGCCCGU----CCGCG------UUCGGCUC-GACUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 2740 | 0.72 | 0.310182 |
Target: 5'- cGGCGGGCcGGCGCGacacggccacggGGCgCGGGCgGGc -3' miRNA: 3'- -CCGCCCGuCCGCGU------------UCG-GCUCGaCUu -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 2852 | 0.71 | 0.36996 |
Target: 5'- cGCGGGCgcggggagggGGGCGCGGGCgucCGAGCcGGGg -3' miRNA: 3'- cCGCCCG----------UCCGCGUUCG---GCUCGaCUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 50023 | 0.71 | 0.359728 |
Target: 5'- cGCGGGUcugaccuggacgacAGG-GC-GGCCGAGCUGAGg -3' miRNA: 3'- cCGCCCG--------------UCCgCGuUCGGCUCGACUU- -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 10394 | 0.71 | 0.339116 |
Target: 5'- gGGCGGGgggAGGCGgGAGCCGGggggucccGCUGGc -3' miRNA: 3'- -CCGCCCg--UCCGCgUUCGGCU--------CGACUu -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 34519 | 0.71 | 0.331702 |
Target: 5'- cGGgGGGUGGgaGCGCGGGCCGGGCc--- -3' miRNA: 3'- -CCgCCCGUC--CGCGUUCGGCUCGacuu -5' |
|||||||
5604 | 5' | -61.4 | NC_001806.1 | + | 146091 | 0.71 | 0.331702 |
Target: 5'- gGGCGGGCAGGCGCucGCgGAa----- -3' miRNA: 3'- -CCGCCCGUCCGCGuuCGgCUcgacuu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home