miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5604 5' -61.4 NC_001806.1 + 151460 0.69 0.464096
Target:  5'- gGGCGGccGCGGGCGCGcuccugaccgcgGGuuCCGAGUUGGg -3'
miRNA:   3'- -CCGCC--CGUCCGCGU------------UC--GGCUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 151307 0.68 0.510828
Target:  5'- cGGUGGGCcgggccucuGGCGCcGGCuCGGGCgGGGg -3'
miRNA:   3'- -CCGCCCGu--------CCGCGuUCG-GCUCGaCUU- -5'
5604 5' -61.4 NC_001806.1 + 148089 0.67 0.569288
Target:  5'- gGGCGccgaGGgGGGCGCuguccGAGCCGcggccGGCUGGGg -3'
miRNA:   3'- -CCGC----CCgUCCGCG-----UUCGGC-----UCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 147225 0.7 0.419694
Target:  5'- aGGCGGcccccGCGGGgGUcgGGGCCGAGgaGGAa -3'
miRNA:   3'- -CCGCC-----CGUCCgCG--UUCGGCUCgaCUU- -5'
5604 5' -61.4 NC_001806.1 + 146091 0.71 0.331702
Target:  5'- gGGCGGGCAGGCGCucGCgGAa----- -3'
miRNA:   3'- -CCGCCCGUCCGCGuuCGgCUcgacuu -5'
5604 5' -61.4 NC_001806.1 + 135110 0.73 0.264151
Target:  5'- aGGgGGGCGGGgGCAGcGCUGcguGCUGGAc -3'
miRNA:   3'- -CCgCCCGUCCgCGUU-CGGCu--CGACUU- -5'
5604 5' -61.4 NC_001806.1 + 132141 0.67 0.549571
Target:  5'- uGGCccuGGCGGcGCGCGuuGCCGAGCa--- -3'
miRNA:   3'- -CCGc--CCGUC-CGCGUu-CGGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 128267 0.73 0.258046
Target:  5'- aGGCGuuugucaGCAcGGCGCGAGCCGGGCcGAc -3'
miRNA:   3'- -CCGCc------CGU-CCGCGUUCGGCUCGaCUu -5'
5604 5' -61.4 NC_001806.1 + 127752 0.7 0.39432
Target:  5'- gGGCGGGCugccGGGUGCGGGCCuguGGCg--- -3'
miRNA:   3'- -CCGCCCG----UCCGCGUUCGGc--UCGacuu -5'
5604 5' -61.4 NC_001806.1 + 122021 0.73 0.276709
Target:  5'- gGGUGGGUGGGUGUggGUCGGGUcGAc -3'
miRNA:   3'- -CCGCCCGUCCGCGuuCGGCUCGaCUu -5'
5604 5' -61.4 NC_001806.1 + 117870 0.75 0.198314
Target:  5'- aGCGGGCGaugucGGCGgGGGCCGAGCccgUGAGc -3'
miRNA:   3'- cCGCCCGU-----CCGCgUUCGGCUCG---ACUU- -5'
5604 5' -61.4 NC_001806.1 + 113762 0.97 0.00568
Target:  5'- gGGCGGGCAGG-GCAAGCCGAGCUGAAu -3'
miRNA:   3'- -CCGCCCGUCCgCGUUCGGCUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 101404 0.68 0.501317
Target:  5'- cGGgGGGCGGGCGgaaAGGCgaGAGC-GAAu -3'
miRNA:   3'- -CCgCCCGUCCGCg--UUCGg-CUCGaCUU- -5'
5604 5' -61.4 NC_001806.1 + 100499 0.68 0.491883
Target:  5'- cGGCGcGGCAGcGauCGAGCCGGGCg--- -3'
miRNA:   3'- -CCGC-CCGUC-CgcGUUCGGCUCGacuu -5'
5604 5' -61.4 NC_001806.1 + 100387 0.68 0.53007
Target:  5'- cGcCGGGCGGcGCGgGGGCCGGGgUGc- -3'
miRNA:   3'- cC-GCCCGUC-CGCgUUCGGCUCgACuu -5'
5604 5' -61.4 NC_001806.1 + 100310 0.67 0.539791
Target:  5'- cGGCugGGGUugGGGCGCGgcauGGCCggcgacGAGCUGGu -3'
miRNA:   3'- -CCG--CCCG--UCCGCGU----UCGG------CUCGACUu -5'
5604 5' -61.4 NC_001806.1 + 99648 0.69 0.455016
Target:  5'- uGGCGGGCcuGGCggGCAGGC--AGCUGGGg -3'
miRNA:   3'- -CCGCCCGu-CCG--CGUUCGgcUCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 95076 0.66 0.616204
Target:  5'- cGGCGGGCGGagcauuucgaucGCGCGuucgggagccaccuGGCgGcGCUGGAu -3'
miRNA:   3'- -CCGCCCGUC------------CGCGU--------------UCGgCuCGACUU- -5'
5604 5' -61.4 NC_001806.1 + 94169 0.72 0.310182
Target:  5'- uGCGGGCGcugcGGCGUcgucugAGGCCGGGcCUGGAg -3'
miRNA:   3'- cCGCCCGU----CCGCG------UUCGGCUC-GACUU- -5'
5604 5' -61.4 NC_001806.1 + 92923 0.7 0.419694
Target:  5'- gGGCgGGGCGGGCcuGgAGGCCGGggcccgcgcGCUGAu -3'
miRNA:   3'- -CCG-CCCGUCCG--CgUUCGGCU---------CGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.